Free for academic non-profit institutions. Other users need a Commercial license

Aliases for LOC101927253 Gene

Subcategory (RNA class) for LOC101927253 Gene

ncRNA

Quality Score for this RNA gene is

2

Aliases for LOC101927253 Gene

  • Uncharacterized LOC101927253 3
  • CTB-22K21.2 3 5

External Ids for LOC101927253 Gene

Previous GeneCards Identifiers for LOC101927253 Gene

  • GC17U901961
  • GC17M048705

Summaries for LOC101927253 Gene

GeneCards Summary for LOC101927253 Gene

LOC101927253 (Uncharacterized LOC101927253) is an RNA Gene, and is affiliated with the ncRNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC101927253 Gene

Genomics for LOC101927253 Gene

Regulatory Elements for LOC101927253 Gene

Enhancers for LOC101927253 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH17G050683 1.6 Ensembl ENCODE dbSUPER 12 -58.6 -58603 13.9 FOXA2 MLX ZFP64 ARID4B SIN3A FEZF1 DMAP1 ZNF2 YY1 SLC30A9 ABCC3 ANKRD40 EPN3 LUC7L3 LOC101927253 SPATA20 LOC105371824 CACNA1G-AS1 ENSG00000250976 CACNA1G
GH17G050659 1.6 Ensembl ENCODE dbSUPER 11.9 -30.0 -30040 4.9 HDGF PKNOX1 FOXA2 MLX ARNT ZFP64 ARID4B SIN3A DMAP1 ZBTB7B ABCC3 ANKRD40 LOC101927253 CACNA1G-AS1 CACNA1G SPATA20 EPN3 ACSF2 LOC105371824 MYCBPAP
GH17G050681 1.5 Ensembl ENCODE dbSUPER 12.1 -49.7 -49715 1.1 HDGF PKNOX1 ZNF493 ZFP64 ARID4B SIN3A ZBTB7B ZNF207 ZNF143 ZNF263 ENSG00000262837 MYCBPAP LOC101927253 ABCC3 ANKRD40 SPATA20 LOC105371824 EPN3 COL1A1 KAT7
GH17G050667 1.4 Ensembl ENCODE dbSUPER 11.9 -36.5 -36493 2.1 DNMT3B THRB RARA SCRT2 EGR2 ELF1 NR2F2 SSRP1 ZNF341 ETV4 SPATA20 ABCC3 LOC101927253 CACNA1G-AS1 CACNA1G LOC105371824 EPN3 MYCBPAP WFIKKN2 CHAD
GH17G050699 0.9 ENCODE dbSUPER 11.2 -67.6 -67628 0.6 ZSCAN4 SIN3A MAFG NR3C1 ZNF316 MAFF GLIS1 CREB1 EMSY MAFK ABCC3 LOC101927253 CACNA1G CACNA1G-AS1 EPN3 MYCBPAP ENSG00000201340 ANKRD40
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around LOC101927253 on UCSC Golden Path with GeneCards custom track

Genomic Location for LOC101927253 Gene

Chromosome:
17
Start:
50,627,030 bp from pter
End:
50,631,940 bp from pter
Size:
4,911 bases
Orientation:
Minus strand

Genomic View for LOC101927253 Gene

Genes around LOC101927253 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC101927253 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC101927253 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC101927253 Gene

Proteins for LOC101927253 Gene

Post-translational modifications for LOC101927253 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC101927253 Gene

Domains & Families for LOC101927253 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC101927253 Gene

Function for LOC101927253 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC101927253 Gene

Localization for LOC101927253 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for LOC101927253 Gene

Pathways & Interactions for LOC101927253 Gene

SuperPathways for LOC101927253 Gene

No Data Available

Interacting Proteins for LOC101927253 Gene

Gene Ontology (GO) - Biological Process for LOC101927253 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC101927253 Gene

Drugs & Compounds for LOC101927253 Gene

No Compound Related Data Available

Transcripts for LOC101927253 Gene

mRNA/cDNA for LOC101927253 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC101927253 Gene

No ASD Table

Relevant External Links for LOC101927253 Gene

GeneLoc Exon Structure for
LOC101927253

Expression for LOC101927253 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC101927253 Gene

mRNA differential expression in normal tissues according to GTEx for LOC101927253 Gene

This gene is overexpressed in Brain - Cerebellum (x10.7) and Brain - Cortex (x5.3).
genes like me logo Genes that share expression patterns with LOC101927253: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC101927253 Gene

Orthologs for LOC101927253 Gene

Evolution for LOC101927253 Gene

ENSEMBL:
Gene Tree for LOC101927253 (if available)
TreeFam:
Gene Tree for LOC101927253 (if available)

No data available for Orthologs for LOC101927253 Gene

Paralogs for LOC101927253 Gene

No data available for Paralogs for LOC101927253 Gene

Variants for LOC101927253 Gene

Sequence variations from dbSNP and Humsavar for LOC101927253 Gene

SNP ID Clin Chr 17 pos Sequence Context AA Info Type
rs200980376 Uncertain significance 50,626,683(+) CCTCG(C/T)CCTCC nc-transcript-variant, downstream-variant-500B, reference, missense
rs1000681818 -- 50,628,996(+) TTGTA(G/T)AATTC intron-variant, utr-variant-3-prime
rs1001006481 -- 50,633,869(+) ATGGA(A/G)GGATC upstream-variant-2KB
rs1001731207 -- 50,628,529(+) GGTCC(A/G)GCCAG intron-variant, utr-variant-3-prime
rs1001763707 -- 50,628,299(+) CTGAG(C/T)GGGGA intron-variant, utr-variant-3-prime

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Relevant External Links for LOC101927253 Gene

Disorders for LOC101927253 Gene

Relevant External Links for LOC101927253

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
LOC101927253

No disorders were found for LOC101927253 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC101927253 Gene

Publications for LOC101927253 Gene

No publications were found for LOC101927253 Gene.

Products for LOC101927253 Gene

Sources for LOC101927253 Gene

Content
Loading form....