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Aliases for LOC101927138 Gene

Subcategory (RNA class) for LOC101927138 Gene

ncRNA

Quality Score for this RNA gene is

2

Aliases for LOC101927138 Gene

  • Uncharacterized LOC101927138 3
  • AL031676.1 5

External Ids for LOC101927138 Gene

Previous GeneCards Identifiers for LOC101927138 Gene

  • GC20U900787
  • GC20P041598

Summaries for LOC101927138 Gene

GeneCards Summary for LOC101927138 Gene

LOC101927138 (Uncharacterized LOC101927138) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC101927138 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC101927138 Gene

Genomics for LOC101927138 Gene

Regulatory Elements for LOC101927138 Gene

Enhancers for LOC101927138 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH20H043456 2.2 ENCODE 14.6 +489.5 489474 3.4 PKNOX1 MLX ZFP64 ARID4B SIN3A DMAP1 ZNF2 YY1 SLC30A9 ZNF766 SRSF6 L3MBTL1 IFT52 RPL27AP ENSG00000237555 LINC01728 LOC101927138 GC20P043474
GH20H042957 0.7 ENCODE 0.4 -11.5 -11528 0.2 SOX5 SOX13 MAX PPARG RAD21 YY1 JUND ATF3 CREB1 HNF4G LOC105372623 LOC101927138
GH20H043012 0.3 FANTOM5 0.3 +44.2 44157 0.4 L3MBTL1 PIR52989 LOC101927138
GH20H043018 0.3 FANTOM5 0.2 +50.3 50278 0.2 PTPRT L3MBTL1 PIR52989 LOC101927138
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around LOC101927138 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC101927138 Gene

Genomic Locations for LOC101927138 Gene
chr20:42,968,743-42,971,492
(GRCh38/hg38)
Size:
2,750 bases
Orientation:
Plus strand
chr20:41,597,383-41,600,132
(GRCh37/hg19)

Genomic View for LOC101927138 Gene

Genes around LOC101927138 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC101927138 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC101927138 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC101927138 Gene

Proteins for LOC101927138 Gene

Post-translational modifications for LOC101927138 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC101927138 Gene

Domains & Families for LOC101927138 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC101927138 Gene

Function for LOC101927138 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC101927138 Gene

Localization for LOC101927138 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC101927138 Gene

Pathways & Interactions for LOC101927138 Gene

SuperPathways for LOC101927138 Gene

No Data Available

Interacting Proteins for LOC101927138 Gene

Gene Ontology (GO) - Biological Process for LOC101927138 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC101927138 Gene

Drugs & Compounds for LOC101927138 Gene

No Compound Related Data Available

Transcripts for LOC101927138 Gene

mRNA/cDNA for LOC101927138 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC101927138 Gene

No ASD Table

Relevant External Links for LOC101927138 Gene

GeneLoc Exon Structure for
LOC101927138

Expression for LOC101927138 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC101927138 Gene

mRNA differential expression in normal tissues according to GTEx for LOC101927138 Gene

This gene is overexpressed in Testis (x52.3).
genes like me logo Genes that share expression patterns with LOC101927138: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC101927138 Gene

Orthologs for LOC101927138 Gene

Evolution for LOC101927138 Gene

ENSEMBL:
Gene Tree for LOC101927138 (if available)
TreeFam:
Gene Tree for LOC101927138 (if available)

No data available for Orthologs for LOC101927138 Gene

Paralogs for LOC101927138 Gene

No data available for Paralogs for LOC101927138 Gene

Variants for LOC101927138 Gene

Sequence variations from dbSNP and Humsavar for LOC101927138 Gene

SNP ID Clin Chr 20 pos Sequence Context AA Info Type
rs1000271373 -- 42,967,255(+) TATTT(A/C/G)GAAAA intron-variant, upstream-variant-2KB
rs1000394384 -- 42,968,591(+) ACTGA(A/C)GGCAA intron-variant, nc-transcript-variant
rs1000789671 -- 42,970,315(+) GGTAA(C/T)TACCA intron-variant
rs1001836330 -- 42,967,976(+) GGCCC(C/T)AGCTA intron-variant, upstream-variant-2KB
rs1002076510 -- 42,969,183(+) TTTTA(C/T)AGCCA intron-variant, nc-transcript-variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Relevant External Links for LOC101927138 Gene

Disorders for LOC101927138 Gene

Relevant External Links for LOC101927138

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
LOC101927138

No disorders were found for LOC101927138 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC101927138 Gene

Publications for LOC101927138 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 60

Products for LOC101927138 Gene

Sources for LOC101927138 Gene

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