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Aliases for LOC101927060 Gene

Subcategory (RNA class) for LOC101927060 Gene

ncRNA

Quality Score for this RNA gene is

2

Aliases for LOC101927060 Gene

  • Uncharacterized LOC101927060 3
  • RP11-156P1.3 5

External Ids for LOC101927060 Gene

Previous GeneCards Identifiers for LOC101927060 Gene

  • GC17U901914
  • GC17M045066
  • GC17M047060
  • GC17M047067

Summaries for LOC101927060 Gene

GeneCards Summary for LOC101927060 Gene

LOC101927060 (Uncharacterized LOC101927060) is an RNA Gene, and is affiliated with the ncRNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC101927060 Gene

Genomics for LOC101927060 Gene

Regulatory Elements for LOC101927060 Gene

Enhancers for LOC101927060 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH17G047069 1.5 Ensembl ENCODE 40.1 +29.1 29120 4.4 CREB3L1 MLX AGO1 ZFP64 DMAP1 YBX1 FEZF1 YY1 SLC30A9 ZNF143 ARL17B MRPL45P2 KANSL1 LOC101927060 CDC27 ENSG00000266601 LRRC37A17P ENSG00000264701 RPS2P47 ENSG00000253347
GH17G046942 1.6 Ensembl ENCODE dbSUPER 20.8 +157.0 156958 2.4 PKNOX1 MLX CREB3L1 AGO1 ZFP64 ARID4B SIN3A DMAP1 SLC30A9 ZNF207 LOC101927060 CDC27 GOSR2 PIR40702 PIR52711
GH17G046922 1.4 ENCODE dbSUPER 23.2 +173.3 173254 9.4 MLX CREB3L1 ZFP64 DMAP1 YY1 SLC30A9 ZNF143 ZNF263 SP3 NFYC LOC101927060 MYL4 WNT3 WNT9B GOSR2 RPRML CDC27 ENSG00000262633 PIR50319 GC17P046939
GH17G047199 1.8 FANTOM5 Ensembl ENCODE dbSUPER 16.6 -100.4 -100382 2.1 HDGF ATF1 CREB3L1 ARID4B SIN3A ZNF2 YY1 GATA2 ZNF143 ZNF207 LOC101927060 RNU7-186P EFCAB13 MYL4 ITGB3
GH17G046940 1.3 ENCODE dbSUPER 21.1 +159.3 159330 1.1 HDGF ATF1 WRNIP1 ARID4B ZNF2 ZNF48 SLC30A9 ZNF121 GLIS2 ZNF143 LOC101927060 MYL4 WNT9B WNT3 GOSR2 PIR50319 PIR52711 GC17P046939
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around LOC101927060 on UCSC Golden Path with GeneCards custom track

Promoters for LOC101927060 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000095141 123 1201 HDGF PKNOX1 ATF1 MLX ARID4B SIN3A DMAP1 ZNF48 ZBTB7B GLIS2

Genomic Location for LOC101927060 Gene

Chromosome:
17
Start:
46,984,045 bp from pter
End:
47,100,323 bp from pter
Size:
116,279 bases
Orientation:
Minus strand

Genomic View for LOC101927060 Gene

Genes around LOC101927060 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC101927060 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC101927060 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC101927060 Gene

Proteins for LOC101927060 Gene

Post-translational modifications for LOC101927060 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC101927060 Gene

Domains & Families for LOC101927060 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC101927060 Gene

Function for LOC101927060 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC101927060 Gene

Localization for LOC101927060 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for LOC101927060 Gene

Pathways & Interactions for LOC101927060 Gene

SuperPathways for LOC101927060 Gene

No Data Available

Interacting Proteins for LOC101927060 Gene

Gene Ontology (GO) - Biological Process for LOC101927060 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC101927060 Gene

Drugs & Compounds for LOC101927060 Gene

No Compound Related Data Available

Transcripts for LOC101927060 Gene

mRNA/cDNA for LOC101927060 Gene

(11) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC101927060 Gene

No ASD Table

Relevant External Links for LOC101927060 Gene

GeneLoc Exon Structure for
LOC101927060

Expression for LOC101927060 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC101927060 Gene

mRNA differential expression in normal tissues according to GTEx for LOC101927060 Gene

This gene is overexpressed in Testis (x4.9).
genes like me logo Genes that share expression patterns with LOC101927060: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC101927060 Gene

Orthologs for LOC101927060 Gene

Evolution for LOC101927060 Gene

ENSEMBL:
Gene Tree for LOC101927060 (if available)
TreeFam:
Gene Tree for LOC101927060 (if available)

No data available for Orthologs for LOC101927060 Gene

Paralogs for LOC101927060 Gene

No data available for Paralogs for LOC101927060 Gene

Variants for LOC101927060 Gene

Sequence variations from dbSNP and Humsavar for LOC101927060 Gene

SNP ID Clin Chr 17 pos Sequence Context AA Info Type
rs1000125092 -- 47,099,591(+) ACATG(G/T)CAAGA intron-variant
rs1000143838 -- 46,989,988(+) TAAGC(C/T)ATTCC intron-variant
rs1000150743 -- 47,076,714(+) TGGGA(A/C)TACAG intron-variant
rs1000175051 -- 46,987,638(+) ACCCA(A/G)AGAAC intron-variant
rs1000208544 -- 46,987,410(+) TACAT(G/T)TCCCC intron-variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Relevant External Links for LOC101927060 Gene

Disorders for LOC101927060 Gene

No disorders were found for LOC101927060 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC101927060 Gene

Publications for LOC101927060 Gene

No publications were found for LOC101927060 Gene.

Products for LOC101927060 Gene

Sources for LOC101927060 Gene

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