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Aliases for LOC101927060 Gene

Subcategory (RNA class) for LOC101927060 Gene

ncRNA

Quality Score for this RNA gene is

2

Aliases for LOC101927060 Gene

  • Uncharacterized LOC101927060 3
  • AC068152.1 5

External Ids for LOC101927060 Gene

Previous GeneCards Identifiers for LOC101927060 Gene

  • GC17U901914
  • GC17M045066
  • GC17M047060
  • GC17M047067

Summaries for LOC101927060 Gene

GeneCards Summary for LOC101927060 Gene

LOC101927060 (Uncharacterized LOC101927060) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC101927060 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC101927060 Gene

Genomics for LOC101927060 Gene

Regulatory Elements for LOC101927060 Gene

Enhancers for LOC101927060 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH17H046922 1.4 ENCODE dbSUPER 23.2 +173.3 173254 9.4 HDGF PKNOX1 MLX ARNT ZFP64 ARID4B SIN3A DMAP1 ZNF2 ZBTB7B LOC101927060 GOSR2 CDC27 ARL17B MYL4 MRPL45P2 EFCAB13 KANSL1 ARL17A WNT3
GH17H047069 1 Ensembl ENCODE 31.8 +29.1 29120 4.4 JUN ETV1 ZBTB40 ZIC2 ZNF316 POLR2A FOS NFE2 TCF7L2 MAFG LOC101927060 MYL4 CDC27 ENSG00000264701 LRRC37A RPRML LRRC37A2 KANSL1 CDK5RAP3 GOSR2
GH17H046942 1.5 Ensembl ENCODE dbSUPER 20.8 +157.0 156958 2.4 PKNOX1 ATF1 MLX ZFP64 ARID4B DMAP1 SLC30A9 GATA2 ZNF143 PAF1 LOC101927060 CDC27 GOSR2 PIR40702 PIR52711
GH17H046940 1.2 ENCODE dbSUPER 21.1 +159.3 159330 1.1 HDGF ARID4B ZNF2 ZNF143 ATF7 PAF1 MXD4 REST MIER2 KAT8 LOC101927060 MYL4 WNT9B WNT3 GOSR2 GC17P046939 PIR52711 PIR50319
GH17H047187 1.4 ENCODE dbSUPER 17.4 -89.3 -89283 4 HDGF PKNOX1 ARNT ZFP64 ARID4B SIN3A DMAP1 ZNF2 YY1 SLC30A9 CDC27 LOC101927060 KANSL1 MYL4
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around LOC101927060 on UCSC Golden Path with GeneCards custom track

Promoters for LOC101927060 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000095141 123 1201 HDGF PKNOX1 ATF1 MLX ARID4B SIN3A DMAP1 ZBTB7B GLIS2 ZNF143

Genomic Locations for LOC101927060 Gene

Genomic Locations for LOC101927060 Gene
chr17:46,984,045-47,100,323
(GRCh38/hg38)
Size:
116,279 bases
Orientation:
Minus strand
chr17:45,061,411-45,177,689
(GRCh37/hg19)

Genomic View for LOC101927060 Gene

Genes around LOC101927060 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC101927060 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC101927060 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC101927060 Gene

Proteins for LOC101927060 Gene

Post-translational modifications for LOC101927060 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC101927060 Gene

Domains & Families for LOC101927060 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC101927060 Gene

Function for LOC101927060 Gene

Phenotypes From GWAS Catalog for LOC101927060 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC101927060 Gene

Localization for LOC101927060 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC101927060 Gene

Pathways & Interactions for LOC101927060 Gene

SuperPathways for LOC101927060 Gene

No Data Available

Interacting Proteins for LOC101927060 Gene

Gene Ontology (GO) - Biological Process for LOC101927060 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC101927060 Gene

Drugs & Compounds for LOC101927060 Gene

No Compound Related Data Available

Transcripts for LOC101927060 Gene

mRNA/cDNA for LOC101927060 Gene

(11) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC101927060 Gene

No ASD Table

Relevant External Links for LOC101927060 Gene

GeneLoc Exon Structure for
LOC101927060

Expression for LOC101927060 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC101927060 Gene

mRNA differential expression in normal tissues according to GTEx for LOC101927060 Gene

This gene is overexpressed in Testis (x4.9).
genes like me logo Genes that share expression patterns with LOC101927060: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC101927060 Gene

Orthologs for LOC101927060 Gene

Evolution for LOC101927060 Gene

ENSEMBL:
Gene Tree for LOC101927060 (if available)
TreeFam:
Gene Tree for LOC101927060 (if available)

No data available for Orthologs for LOC101927060 Gene

Paralogs for LOC101927060 Gene

No data available for Paralogs for LOC101927060 Gene

Variants for LOC101927060 Gene

Sequence variations from dbSNP and Humsavar for LOC101927060 Gene

SNP ID Clin Chr 17 pos Sequence Context AA Info Type
rs1000125092 -- 47,099,591(+) ACATG(G/T)CAAGA intron-variant
rs1000143838 -- 46,989,988(+) TAAGC(C/T)ATTCC intron-variant
rs1000150743 -- 47,076,714(+) TGGGA(A/C)TACAG intron-variant
rs1000175051 -- 46,987,638(+) ACCCA(A/G)AGAAC intron-variant
rs1000208544 -- 46,987,410(+) TACAT(G/T)TCCCC intron-variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Relevant External Links for LOC101927060 Gene

Disorders for LOC101927060 Gene

No disorders were found for LOC101927060 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC101927060 Gene

Publications for LOC101927060 Gene

No publications were found for LOC101927060 Gene.

Products for LOC101927060 Gene

Sources for LOC101927060 Gene

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