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Aliases for LOC100996842 Gene

Aliases for LOC100996842 Gene

  • Uncharacterized LOC100996842 3
  • AC016876.1 5

External Ids for LOC100996842 Gene

Previous GeneCards Identifiers for LOC100996842 Gene

  • GC17U901727
  • GC17M007581

Summaries for LOC100996842 Gene

GeneCards Summary for LOC100996842 Gene

LOC100996842 (Uncharacterized LOC100996842) is a Protein Coding gene.

Additional gene information for LOC100996842 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC100996842 Gene

Genomics for LOC100996842 Gene

Regulatory Elements for LOC100996842 Gene

Enhancers for LOC100996842 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH17H007571 1.7 Ensembl ENCODE dbSUPER 28 +6.6 6626 14 MLX ZFP64 FEZF1 DMAP1 YY1 SLC30A9 ZNF416 ZNF143 SP3 NFYC DVL2 PFAS CNTROB CTC1 POLR2A SNORD10 SNORA48 ENSG00000265749 SENP3 LOC100996842
GH17H008185 1.4 ENCODE dbSUPER 29.5 -603.6 -603600 5 MLX ZFP64 YY1 ZNF143 SP3 ZC3H11A NFYC ZFP41 SSRP1 GLIS1 DVL2 PFAS CNTROB WRAP53 ENSG00000265749 POLR2A NEURL4 SENP3 CTC1 LOC100996842
GH17H007233 1.5 ENCODE dbSUPER 26.2 +346.1 346104 11 MLX ZFP64 FEZF1 DMAP1 YY1 ZNF416 ZNF143 SP3 NFYC MEF2D DVL2 CNTROB SNORD10 SNORA48 WRAP53 POLR2A NEURL4 KCTD11 NLGN2 PLSCR3
GH17H007833 1.9 FANTOM5 ENCODE dbSUPER 18.2 -254.9 -254946 12 MLX ZFP64 FEZF1 DMAP1 YY1 ZNF416 ZNF143 ZNF548 SP3 NFYC DVL2 PFAS CTC1 WRAP53 POLR2A CNTROB SNORD10 ENSG00000265749 NLGN2 KDM6B
GH17H008225 1.6 Ensembl ENCODE dbSUPER 21 -641.6 -641643 2 HDGF PKNOX1 ARNT SIN3A FEZF1 ZNF2 ZNF207 FOS REST ZNF592 DVL2 PFAS NEURL4 ENSG00000265749 SENP3 LOC100996842 CNTROB PER1 POLR2A CTC1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around LOC100996842 on UCSC Golden Path with GeneCards custom track

Promoters for LOC100996842 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000090881 684 1401 HDGF FOXA2 PKNOX1 ARNT ARID4B SIN3A FEZF1 DMAP1 ZNF2 YY1

Genomic Location for LOC100996842 Gene

Chromosome:
17
Start:
7,581,964 bp from pter
End:
7,584,784 bp from pter
Size:
2,821 bases
Orientation:
Minus strand

Genomic View for LOC100996842 Gene

Genes around LOC100996842 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC100996842 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100996842 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC100996842 Gene

Proteins for LOC100996842 Gene

Post-translational modifications for LOC100996842 Gene

No Post-translational modifications

Other Protein References for LOC100996842 Gene

REFSEQ proteins:

No data available for DME Specific Peptides for LOC100996842 Gene

Domains & Families for LOC100996842 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC100996842 Gene

Function for LOC100996842 Gene

Phenotypes From GWAS Catalog for LOC100996842 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100996842 Gene

Localization for LOC100996842 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100996842 Gene

Pathways & Interactions for LOC100996842 Gene

SuperPathways for LOC100996842 Gene

No Data Available

Interacting Proteins for LOC100996842 Gene

Gene Ontology (GO) - Biological Process for LOC100996842 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC100996842 Gene

Drugs & Compounds for LOC100996842 Gene

No Compound Related Data Available

Transcripts for LOC100996842 Gene

mRNA/cDNA for LOC100996842 Gene

(2) REFSEQ mRNAs :
(4) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100996842 Gene

No ASD Table

Relevant External Links for LOC100996842 Gene

GeneLoc Exon Structure for
LOC100996842

Expression for LOC100996842 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC100996842 Gene

genes like me logo Genes that share expression patterns with LOC100996842: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100996842 Gene

Orthologs for LOC100996842 Gene

Evolution for LOC100996842 Gene

ENSEMBL:
Gene Tree for LOC100996842 (if available)
TreeFam:
Gene Tree for LOC100996842 (if available)

No data available for Orthologs for LOC100996842 Gene

Paralogs for LOC100996842 Gene

No data available for Paralogs for LOC100996842 Gene

Variants for LOC100996842 Gene

Sequence variations from dbSNP and Humsavar for LOC100996842 Gene

SNP ID Clin Chr 17 pos Sequence Context AA Info Type
rs104894586 Pathogenic 7,585,994(+) TGAAG(A/G)GTTGA nc-transcript-variant, upstream-variant-2KB, reference, missense, utr-variant-5-prime
rs104894588 Pathogenic 7,583,864(+) CAATA(C/T)GGCGG intron-variant, nc-transcript-variant, upstream-variant-2KB, reference, missense, utr-variant-5-prime
rs104894589 Pathogenic 7,585,997(+) AGGGT(C/T)GAGTC nc-transcript-variant, upstream-variant-2KB, reference, missense, utr-variant-5-prime
rs2075230 Likely benign 7,583,790(-) GACAC(C/G/T)CCGCC intron-variant, nc-transcript-variant, upstream-variant-2KB, utr-variant-5-prime
rs148935720 Uncertain significance 7,583,905(+) TCGTG(C/T)CGATT intron-variant, nc-transcript-variant, upstream-variant-2KB, reference, missense, utr-variant-5-prime

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Relevant External Links for LOC100996842 Gene

Disorders for LOC100996842 Gene

Relevant External Links for LOC100996842

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
LOC100996842

No disorders were found for LOC100996842 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC100996842 Gene

Publications for LOC100996842 Gene

  1. Genome-wide association study of sex hormones, gonadotropins and sex hormone-binding protein in Chinese men. (PMID: 24049095) Chen Z … Sun J (Journal of medical genetics 2013) 3 60
  2. Identification of genes related to Parkinson's disease using expressed sequence tags. (PMID: 17213182) Kim JM … Kim NS (DNA research : an international journal for rapid publication of reports on genes and genomes 2006) 3 60

Products for LOC100996842 Gene

Sources for LOC100996842 Gene

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