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Aliases for LOC100996660 Gene

Subcategory (RNA class) for LOC100996660 Gene


Quality Score for this RNA gene is


Aliases for LOC100996660 Gene

  • Uncharacterized LOC100996660 3
  • AC025048.2 5

External Ids for LOC100996660 Gene

Previous GeneCards Identifiers for LOC100996660 Gene

  • GC17U901791

Summaries for LOC100996660 Gene

GeneCards Summary for LOC100996660 Gene

LOC100996660 (Uncharacterized LOC100996660) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC100996660 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC100996660 Gene

Genomics for LOC100996660 Gene

Regulatory Elements for LOC100996660 Gene

Enhancers for LOC100996660 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH17H059564 1.2 ENCODE 28.5 +569.8 569809 2.1 YBX1 DMAP1 SLC30A9 ZNF416 ZNF143 SP3 NFYC MEF2D ZNF610 GLIS1 HEATR6 TUBD1 APPBP2 DHX40 RPS6KB1 NDUFB8P2 LOC100996660 SKA2 SMG8 SPDYE22P
GH17H059781 2.3 VISTA FANTOM5 Ensembl ENCODE dbSUPER 14 +348.1 348074 11.9 MLX ZFP64 YBX1 FEZF1 DMAP1 YY1 SLC30A9 ZNF143 SP3 ZC3H11A RPS6KB1 TUBD1 LOC101927755 SKA2 LOC100996660 HEATR6 MIR21 RNU6-450P PPM1D TRIM37
GH17H059616 1.8 FANTOM5 ENCODE dbSUPER 12.9 +516.1 516074 6.8 MLX FEZF1 DMAP1 YY1 SLC30A9 ZNF143 SP3 MEF2D SSRP1 ZNF610 TUBD1 RPS6KB1 HEATR6 SKA2 PPM1D DHX40 RNFT1 NDUFB8P2 LOC100996660 APPBP2
GH17H059705 1.4 ENCODE dbSUPER 14 +427.9 427876 5.2 HDGF PKNOX1 MLX ARID4B SIN3A FEZF1 DMAP1 ZBTB7B YY1 SLC30A9 PPM1D RPS6KB1 TUBD1 RNFT1 SKA2 NDUFB8P2 LOC101927755 LOC100996660 RNU6-450P MIR21
GH17H060161 1.5 FANTOM5 Ensembl ENCODE 10.5 -26.9 -26859 2.5 HDGF PKNOX1 ARNT ZNF493 ZSCAN4 KLF17 BMI1 RAD21 GLIS2 EGR1 VMP1 USP32 HEATR6 CA4 LOC100996660 ENSG00000274378 RPL32P32 PPM1D GC17M060146
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around LOC100996660 on UCSC Golden Path with GeneCards custom track

Promoters for LOC100996660 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000096450 548 1601 PKNOX1 ARNT ARID4B SIN3A FEZF1 YY1 SLC30A9 ZNF143 FOS SP3

Genomic Locations for LOC100996660 Gene

Genomic Locations for LOC100996660 Gene
9,214 bases
Minus strand

Genomic View for LOC100996660 Gene

Genes around LOC100996660 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC100996660 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100996660 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC100996660 Gene

Proteins for LOC100996660 Gene

Post-translational modifications for LOC100996660 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC100996660 Gene

Domains & Families for LOC100996660 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC100996660 Gene

Function for LOC100996660 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100996660 Gene

Localization for LOC100996660 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100996660 Gene

Pathways & Interactions for LOC100996660 Gene

SuperPathways for LOC100996660 Gene

No Data Available

Interacting Proteins for LOC100996660 Gene

Gene Ontology (GO) - Biological Process for LOC100996660 Gene


No data available for Pathways by source and SIGNOR curated interactions for LOC100996660 Gene

Drugs & Compounds for LOC100996660 Gene

No Compound Related Data Available

Transcripts for LOC100996660 Gene

mRNA/cDNA for LOC100996660 Gene

(4) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for LOC100996660 Gene

Uncharacterized LOC100996660:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100996660 Gene

No ASD Table

Relevant External Links for LOC100996660 Gene

GeneLoc Exon Structure for

Expression for LOC100996660 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC100996660 Gene

SOURCE GeneReport for Unigene cluster for LOC100996660 Gene:

genes like me logo Genes that share expression patterns with LOC100996660: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100996660 Gene

Orthologs for LOC100996660 Gene

Evolution for LOC100996660 Gene

Gene Tree for LOC100996660 (if available)
Gene Tree for LOC100996660 (if available)

No data available for Orthologs for LOC100996660 Gene

Paralogs for LOC100996660 Gene

No data available for Paralogs for LOC100996660 Gene

Variants for LOC100996660 Gene

Sequence variations from dbSNP and Humsavar for LOC100996660 Gene

SNP ID Clin Chr 17 pos Sequence Context AA Info Type
rs1001004408 -- 60,133,389(+) AGTCA(A/G)GCAAG intron-variant, upstream-variant-2KB
rs1001524194 -- 60,136,543(+) AGGGC(A/G)GACAG upstream-variant-2KB
rs1001671668 -- 60,130,393(+) TTTTT(C/T)TGTAC intron-variant
rs1001703791 -- 60,130,614(+) CTCAT(C/T)CTTTT intron-variant
rs1001760675 -- 60,136,707(+) CCCCC(A/C)CGACA upstream-variant-2KB

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Relevant External Links for LOC100996660 Gene

Disorders for LOC100996660 Gene

Relevant External Links for LOC100996660

Atlas of Genetics and Cytogenetics in Oncology and Haematology:

No disorders were found for LOC100996660 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC100996660 Gene

Publications for LOC100996660 Gene

No publications were found for LOC100996660 Gene.

Products for LOC100996660 Gene

Sources for LOC100996660 Gene

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