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Aliases for LOC100996549 Gene

Subcategory (RNA class) for LOC100996549 Gene


Quality Score for this RNA gene is


Aliases for LOC100996549 Gene

  • Uncharacterized LOC100996549 3
  • AC082651.3 5

External Ids for LOC100996549 Gene

Previous GeneCards Identifiers for LOC100996549 Gene

  • GC02M009899

Summaries for LOC100996549 Gene

GeneCards Summary for LOC100996549 Gene

LOC100996549 (Uncharacterized LOC100996549) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC100996549 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC100996549 Gene

Genomics for LOC100996549 Gene

Regulatory Elements for LOC100996549 Gene

Enhancers for LOC100996549 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH02H009779 1.7 FANTOM5 Ensembl ENCODE dbSUPER 14.2 -2.9 -2945 4.7 BCOR CTCF PKNOX1 ZMYM3 MAX CEBPG BMI1 RAD21 ZIC2 ZBTB40 LOC100996549 PIR61604
GH02H009738 1.5 FANTOM5 Ensembl ENCODE dbSUPER 8.3 +39.5 39532 2.1 BCOR SMARCA5 PKNOX1 ZBED1 ZMYM3 ZNF217 ADNP EED KDM1A ZBTB33 ADAM17 LOC100996549 YWHAQ KLF11 RNU4-73P GC02M009741 ENSG00000244260
GH02H009752 1.8 FANTOM5 Ensembl ENCODE dbSUPER 6.5 +25.0 25015 2.5 HDGF PKNOX1 ATF1 ARNT SIN3A TCF12 GATA2 ATF7 FOS RUNX3 ADAM17 LOC100996549 YWHAQ IAH1 KLF11 GRHL1 LOC105373420
GH02H009763 1.7 FANTOM5 Ensembl ENCODE dbSUPER 6.8 +12.4 12399 5.9 ELF3 PKNOX1 ATF1 BATF RAD21 RARA TCF12 EGR1 RUNX3 CREM RNU4-73P ENSG00000233502 LOC100996549 ENSG00000257135 LOC101929882 ADAM17 YWHAQ LOC105373420
GH02H009772 1.3 Ensembl ENCODE dbSUPER 8.2 +8.0 7970 1.2 HDAC1 RB1 ARID4B SIN3A RAD21 EGR1 ZNF143 ATF7 CREM DEK ENSG00000240960 RNU4-73P LOC100996549 LOC105373420
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around LOC100996549 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC100996549 Gene

Genomic Locations for LOC100996549 Gene
21,080 bases
Minus strand

Genomic View for LOC100996549 Gene

Genes around LOC100996549 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC100996549 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100996549 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC100996549 Gene

Proteins for LOC100996549 Gene

Post-translational modifications for LOC100996549 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC100996549 Gene

Domains & Families for LOC100996549 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC100996549 Gene

Function for LOC100996549 Gene

Phenotypes From GWAS Catalog for LOC100996549 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100996549 Gene

Localization for LOC100996549 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100996549 Gene

Pathways & Interactions for LOC100996549 Gene

SuperPathways for LOC100996549 Gene

No Data Available

Interacting Proteins for LOC100996549 Gene

Gene Ontology (GO) - Biological Process for LOC100996549 Gene


No data available for Pathways by source and SIGNOR curated interactions for LOC100996549 Gene

Drugs & Compounds for LOC100996549 Gene

No Compound Related Data Available

Transcripts for LOC100996549 Gene

mRNA/cDNA for LOC100996549 Gene

(4) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for LOC100996549 Gene

Uncharacterized LOC100996549:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100996549 Gene

No ASD Table

Relevant External Links for LOC100996549 Gene

GeneLoc Exon Structure for

Expression for LOC100996549 Gene

mRNA differential expression in normal tissues according to GTEx for LOC100996549 Gene

This gene is overexpressed in Skin - Not Sun Exposed (Suprapubic) (x12.9) and Skin - Sun Exposed (Lower leg) (x12.8).

SOURCE GeneReport for Unigene cluster for LOC100996549 Gene:


No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100996549 Gene

Orthologs for LOC100996549 Gene

Evolution for LOC100996549 Gene

Gene Tree for LOC100996549 (if available)
Gene Tree for LOC100996549 (if available)

No data available for Orthologs for LOC100996549 Gene

Paralogs for LOC100996549 Gene

No data available for Paralogs for LOC100996549 Gene

Variants for LOC100996549 Gene

Sequence variations from dbSNP and Humsavar for LOC100996549 Gene

SNP ID Clin Chr 02 pos Sequence Context AA Info Type
rs1000166569 -- 9,768,945(+) TTGAT(G/T)AGGAA intron-variant
rs1000275192 -- 9,771,316(+) GACGG(C/G)ATCCA intron-variant
rs1000300838 -- 9,764,112(+) CTGCA(C/T)AGGGT intron-variant
rs1000384565 -- 9,778,443(+) TACCT(C/G)CAGAC nc-transcript-variant
rs1000387775 -- 9,767,171(+) ATCAT(A/G)GCCCC intron-variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Relevant External Links for LOC100996549 Gene

Disorders for LOC100996549 Gene

Relevant External Links for LOC100996549

Atlas of Genetics and Cytogenetics in Oncology and Haematology:

No disorders were found for LOC100996549 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC100996549 Gene

Publications for LOC100996549 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 60

Products for LOC100996549 Gene

Sources for LOC100996549 Gene

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