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Aliases for LOC100653233 Gene

Subcategory (RNA class) for LOC100653233 Gene

ncRNA

Quality Score for this RNA gene is

2

Aliases for LOC100653233 Gene

  • Uncharacterized LOC100653233 3
  • AC237221.1 5

External Ids for LOC100653233 Gene

Previous GeneCards Identifiers for LOC100653233 Gene

  • GC07U903253
  • GC07P057424
  • GC07P057465
  • GC07P057517
  • GC07P057532
  • GC07P057550
  • GC07P057562

Summaries for LOC100653233 Gene

GeneCards Summary for LOC100653233 Gene

LOC100653233 (Uncharacterized LOC100653233) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC100653233 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC100653233 Gene

Genomics for LOC100653233 Gene

Genomic Location for LOC100653233 Gene

Chromosome:
7
Start:
57,404,767 bp from pter
End:
57,416,203 bp from pter
Size:
11,437 bases
Orientation:
Plus strand

Genomic View for LOC100653233 Gene

Genes around LOC100653233 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC100653233 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100653233 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC100653233 Gene

No data available for Regulatory Elements for LOC100653233 Gene

Proteins for LOC100653233 Gene

Post-translational modifications for LOC100653233 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC100653233 Gene

Domains & Families for LOC100653233 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC100653233 Gene

Function for LOC100653233 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100653233 Gene

Localization for LOC100653233 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100653233 Gene

Pathways & Interactions for LOC100653233 Gene

SuperPathways for LOC100653233 Gene

No Data Available

Interacting Proteins for LOC100653233 Gene

Gene Ontology (GO) - Biological Process for LOC100653233 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC100653233 Gene

Drugs & Compounds for LOC100653233 Gene

No Compound Related Data Available

Transcripts for LOC100653233 Gene

mRNA/cDNA for LOC100653233 Gene

(5) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for LOC100653233 Gene

Uncharacterized LOC100653233:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100653233 Gene

No ASD Table

Relevant External Links for LOC100653233 Gene

GeneLoc Exon Structure for
LOC100653233

Expression for LOC100653233 Gene

SOURCE GeneReport for Unigene cluster for LOC100653233 Gene:

Hs.127379
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100653233 Gene

Orthologs for LOC100653233 Gene

Evolution for LOC100653233 Gene

ENSEMBL:
Gene Tree for LOC100653233 (if available)
TreeFam:
Gene Tree for LOC100653233 (if available)

No data available for Orthologs for LOC100653233 Gene

Paralogs for LOC100653233 Gene

No data available for Paralogs for LOC100653233 Gene

Variants for LOC100653233 Gene

Sequence variations from dbSNP and Humsavar for LOC100653233 Gene

SNP ID Clin Chr 07 pos Sequence Context AA Info Type
rs10262907 -- 57,404,638(+) AAGCC(A/G)GGCTG nc-transcript-variant, upstream-variant-2KB
rs10609234 -- 57,402,859(+) TAGAG(-/T)TTTTT nc-transcript-variant, upstream-variant-2KB
rs11135643 -- 57,404,833(+) GCTCT(C/T)AACGG nc-transcript-variant, upstream-variant-2KB
rs111508852 -- 57,406,678(+) CCTGG(A/T)TTGGT intron-variant, upstream-variant-2KB
rs111734303 -- 57,403,231(+) AGATC(A/G)GGAGT intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for LOC100653233 Gene

Variant ID Type Subtype PubMed ID
dgv11354n54 CNV gain 21841781
dgv6367n100 CNV gain 25217958
dgv6368n100 CNV loss 25217958
dgv6369n100 CNV gain 25217958
dgv6370n100 CNV loss 25217958
dgv6371n100 CNV gain 25217958
esv2752161 CNV gain 17911159
esv2752162 CNV gain 17911159
esv2761119 CNV gain+loss 21179565
esv3576359 CNV gain 25503493
nsv1016541 CNV gain 25217958
nsv1027062 CNV gain 25217958
nsv296 CNV insertion 15895083
nsv464484 CNV gain 19166990
nsv509201 CNV insertion 20534489
nsv520659 CNV gain 19592680
nsv5762 CNV insertion 18451855
nsv607048 CNV gain 21841781
nsv824124 CNV gain 20364138
nsv970846 CNV duplication 23825009

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Relevant External Links for LOC100653233 Gene

Disorders for LOC100653233 Gene

Relevant External Links for LOC100653233

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
LOC100653233

No disorders were found for LOC100653233 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC100653233 Gene

Publications for LOC100653233 Gene

No publications were found for LOC100653233 Gene.

Products for LOC100653233 Gene

Sources for LOC100653233 Gene

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