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Aliases for LOC100652999 Gene

Subcategory (RNA class) for LOC100652999 Gene

ncRNA

Quality Score for this RNA gene is

2

Aliases for LOC100652999 Gene

  • Uncharacterized LOC100652999 3
  • RP11-793H13.3 5

External Ids for LOC100652999 Gene

Previous GeneCards Identifiers for LOC100652999 Gene

  • GC12U901623
  • GC12P053909

Summaries for LOC100652999 Gene

GeneCards Summary for LOC100652999 Gene

LOC100652999 (Uncharacterized LOC100652999) is an RNA Gene, and is affiliated with the ncRNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC100652999 Gene

Genomics for LOC100652999 Gene

Regulatory Elements for LOC100652999 Gene

Enhancers for LOC100652999 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH12G053971 2.1 FANTOM5 Ensembl ENCODE dbSUPER 29.4 +476.3 476259 36.8 CREB3L1 AGO1 FEZF1 DMAP1 YY1 ZNF416 ZNF143 ZNF548 ZNF263 SP3 ZNF740 MAP3K12 ENSG00000258344 LOC100652999 HOXC8 HOXC5 SP1 HOTAIR CBX5 HOXC4
GH12G053179 1.1 ENCODE 38.9 -332.3 -332267 4.8 HDGF HNRNPUL1 PKNOX1 FOXA2 MLX CREB3L1 ARID4B SIN3A DMAP1 ZNF2 ZNF740 LOC100652999 AAAS SP1 SOAT2 IGFBP6 TARBP2 CSAD ITGB7
GH12G053498 1.4 ENCODE dbSUPER 22 -13.4 -13378 5.0 CREB3L1 AGO1 ZFP64 DMAP1 YY1 ZNF143 ZNF548 ZNF263 SP3 NFYC ZNF740 SP1 MAP3K12 CBX5 ENSG00000258344 LOC100652999 PRR13 AAAS ATP5G2 SPRYD3
GH12G053386 1.5 Ensembl ENCODE dbSUPER 19.1 -124.8 -124814 6.3 ATF1 ZNF493 ZFP64 YY1 ZNF121 ZNF202 SP3 TSHZ1 REST ZNF623 ZNF740 SP1 AAAS CBX5 MAP3K12 ENSG00000258344 IGFBP6 LOC100652999 PRR13 PFDN5
GH12G053767 1 ENCODE 28.2 +253.9 253878 0.1 HDGF ATF1 PKNOX1 ARNT ZNF133 GLI4 ZNF2 GLIS2 KLF7 DEK ZNF740 ENSG00000258344 LOC100652999 AAAS TARBP2 SP1 MAP3K12 ENSG00000270175 IGFBP6 CBX5
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around LOC100652999 on UCSC Golden Path with GeneCards custom track

Genomic Location for LOC100652999 Gene

Chromosome:
12
Start:
53,513,984 bp from pter
End:
53,517,608 bp from pter
Size:
3,625 bases
Orientation:
Plus strand

Genomic View for LOC100652999 Gene

Genes around LOC100652999 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC100652999 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100652999 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC100652999 Gene

Proteins for LOC100652999 Gene

Post-translational modifications for LOC100652999 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC100652999 Gene

Domains & Families for LOC100652999 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC100652999 Gene

Function for LOC100652999 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100652999 Gene

Localization for LOC100652999 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for LOC100652999 Gene

Pathways & Interactions for LOC100652999 Gene

SuperPathways for LOC100652999 Gene

No Data Available

Interacting Proteins for LOC100652999 Gene

Gene Ontology (GO) - Biological Process for LOC100652999 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC100652999 Gene

Drugs & Compounds for LOC100652999 Gene

No Compound Related Data Available

Transcripts for LOC100652999 Gene

mRNA/cDNA for LOC100652999 Gene

(3) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for LOC100652999 Gene

Uncharacterized LOC100652999:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100652999 Gene

No ASD Table

Relevant External Links for LOC100652999 Gene

GeneLoc Exon Structure for
LOC100652999

Expression for LOC100652999 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC100652999 Gene

SOURCE GeneReport for Unigene cluster for LOC100652999 Gene:

Hs.633602
genes like me logo Genes that share expression patterns with LOC100652999: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100652999 Gene

Orthologs for LOC100652999 Gene

Evolution for LOC100652999 Gene

ENSEMBL:
Gene Tree for LOC100652999 (if available)
TreeFam:
Gene Tree for LOC100652999 (if available)

No data available for Orthologs for LOC100652999 Gene

Paralogs for LOC100652999 Gene

No data available for Paralogs for LOC100652999 Gene

Variants for LOC100652999 Gene

Sequence variations from dbSNP and Humsavar for LOC100652999 Gene

SNP ID Clin Chr 12 pos Sequence Context AA Info Type
rs1001115283 -- 53,517,572(+) TTAAC(C/T)TATCT intron-variant, nc-transcript-variant
rs1002297099 -- 53,516,723(+) GGAAG(-/T)GGCAT intron-variant, nc-transcript-variant, utr-variant-3-prime
rs1002349380 -- 53,516,491(+) AGGTA(G/T)AGAGA intron-variant, nc-transcript-variant, utr-variant-3-prime
rs1002620893 -- 53,514,952(+) AGCAG(G/T)AGAAA intron-variant, utr-variant-3-prime
rs1003302179 -- 53,515,123(+) TACCT(A/G)ATGGT intron-variant, utr-variant-3-prime

Structural Variations from Database of Genomic Variants (DGV) for LOC100652999 Gene

Variant ID Type Subtype PubMed ID
nsv983486 CNV duplication 23825009

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Relevant External Links for LOC100652999 Gene

Disorders for LOC100652999 Gene

Relevant External Links for LOC100652999

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
LOC100652999

No disorders were found for LOC100652999 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC100652999 Gene

Publications for LOC100652999 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for LOC100652999 Gene

Sources for LOC100652999 Gene

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