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Aliases for LOC100533630 Gene

Subcategory (RNA class) for LOC100533630 Gene

lncRNA

Aliases for LOC100533630 Gene

  • Chimerin 1 Pseudogene 3
  • AC093844.1 5

External Ids for LOC100533630 Gene

ORGUL Members for LOC100533630 Gene

Previous GeneCards Identifiers for LOC100533630 Gene

  • GC04U901458
  • GC04P184302

Summaries for LOC100533630 Gene

GeneCards Summary for LOC100533630 Gene

LOC100533630 (Chimerin 1 Pseudogene) is a Pseudogene, and is affiliated with the lncRNA class.

Additional gene information for LOC100533630 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC100533630 Gene

Genomics for LOC100533630 Gene

Regulatory Elements for LOC100533630 Gene

Enhancers for LOC100533630 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH04H183397 1.5 FANTOM5 Ensembl ENCODE 0.4 +18.6 18570 2 ATF1 ARID4B DMAP1 ZNF2 ZNF766 CBX5 ZNF143 RUNX3 CAVIN1 REST CDKN2AIP CLDN24 CLDN22 LOC100533630 LOC100127981
GH04H183406 1.6 FANTOM5 Ensembl ENCODE 0.3 +29.1 29116 5 ATF1 ARNT YBX1 TCF12 CBX5 ZNF143 RUNX3 REST KAT8 SNIP1 CDKN2AIP TRAPPC11 LOC100127981 LOC100533630
GH04H183347 1.3 Ensembl ENCODE 0.3 -30.8 -30828 4 PKNOX1 ATF1 ZNF766 GATA2 ELK1 FOS ATF7 CAVIN1 REST ZNF592 CLDN24 TRAPPC11 CDKN2AIP RNU6-1053P CLDN22 LOC100533630
GH04H183334 1.1 Ensembl ENCODE 0.3 -44.5 -44521 1 ETV1 JUN BACH1 ZNF175 CEBPG PYGO2 ZBTB40 FOSL1 POLR2A FOS TRAPPC11 RNU6-1053P CDKN2AIP CLDN24 LOC100533630
GH04H183396 0.8 ENCODE 0.4 +15.2 15248 0 LEF1 PKNOX1 ATF1 TBL1XR1 NFRKB TAL1 TCF12 POLR2A GATA2 NCOR1 CDKN2AIP CLDN24 CLDN22 LOC100533630 LOC100127981
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around LOC100533630 on UCSC Golden Path with GeneCards custom track

Genomic Location for LOC100533630 Gene

Chromosome:
4
Start:
183,380,345 bp from pter
End:
183,381,705 bp from pter
Size:
1,361 bases
Orientation:
Plus strand

Genomic View for LOC100533630 Gene

Genes around LOC100533630 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC100533630 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100533630 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC100533630 Gene

Proteins for LOC100533630 Gene

Post-translational modifications for LOC100533630 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC100533630 Gene

Domains & Families for LOC100533630 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC100533630 Gene

Function for LOC100533630 Gene

Phenotypes From GWAS Catalog for LOC100533630 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100533630 Gene

Localization for LOC100533630 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100533630 Gene

Pathways & Interactions for LOC100533630 Gene

SuperPathways for LOC100533630 Gene

No Data Available

Interacting Proteins for LOC100533630 Gene

Gene Ontology (GO) - Biological Process for LOC100533630 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC100533630 Gene

Drugs & Compounds for LOC100533630 Gene

No Compound Related Data Available

Transcripts for LOC100533630 Gene

mRNA/cDNA for LOC100533630 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100533630 Gene

No ASD Table

Relevant External Links for LOC100533630 Gene

GeneLoc Exon Structure for
LOC100533630

Expression for LOC100533630 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC100533630 Gene

mRNA differential expression in normal tissues according to GTEx for LOC100533630 Gene

This gene is overexpressed in Testis (x6.8), Brain - Nucleus accumbens (basal ganglia) (x6.1), Brain - Anterior cingulate cortex (BA24) (x4.6), and Brain - Frontal Cortex (BA9) (x4.5).
genes like me logo Genes that share expression patterns with LOC100533630: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100533630 Gene

Orthologs for LOC100533630 Gene

Evolution for LOC100533630 Gene

ENSEMBL:
Gene Tree for LOC100533630 (if available)
TreeFam:
Gene Tree for LOC100533630 (if available)

No data available for Orthologs for LOC100533630 Gene

Paralogs for LOC100533630 Gene

No data available for Paralogs for LOC100533630 Gene

Variants for LOC100533630 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Relevant External Links for LOC100533630 Gene

Disorders for LOC100533630 Gene

No disorders were found for LOC100533630 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC100533630 Gene

Publications for LOC100533630 Gene

No publications were found for LOC100533630 Gene.

Products for LOC100533630 Gene

Sources for LOC100533630 Gene

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