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Aliases for LOC100533627 Gene

Aliases for LOC100533627 Gene

  • Tubulin Alpha 1c Pseudogene 3
  • RP11-346M5.1 5

External Ids for LOC100533627 Gene

Previous GeneCards Identifiers for LOC100533627 Gene

  • GC01U903222
  • GC01P047358

Summaries for LOC100533627 Gene

GeneCards Summary for LOC100533627 Gene

LOC100533627 (Tubulin Alpha 1c Pseudogene) is a Pseudogene.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC100533627 Gene

Genomics for LOC100533627 Gene

Regulatory Elements for LOC100533627 Gene

Enhancers for LOC100533627 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH01G046804 1.1 Ensembl ENCODE dbSUPER 0.2 -85.4 -85378 4.2 PKNOX1 HLF CEBPB CREB1 MAX REST PRDM10 NR3C1 NR2F2 CYP4B1 CYP4A11 CYP4X1 GC01M046749 LOC100533627
GH01G046857 0.7 Ensembl 0.3 -33.7 -33699 0.6 HDAC1 ELF3 ATF1 FEZF1 THRB ZSCAN5C DNMT1 KLF13 RNF2 ELF4 LOC100533627 GC01M046749
GH01G046788 0.8 dbSUPER 0.1 -103.1 -103148 0.6 SOX13 FOXA2 SAP130 CEBPG ZNF384 TEAD3 NR2F6 CREM GATAD2A SOX5 GC01M046749 LOC100533627
GH01G046797 0.8 dbSUPER 0.1 -92.7 -92707 2.9 ATF1 FOXA2 ARNT ARID4B RAD21 ETV6 CREM ZNF362 CEBPB ZEB2 CYP4B1 CYP4A22 CYP4A11 FAAH GC01M046749 LOC100533627
GH01G046789 0.7 dbSUPER 0.1 -102.1 -102065 1.3 SOX5 SOX13 FOXA2 FOXA3 CEBPB CEBPG ZNF121 TCF12 CREB1 CREM GC01M046749 LOC100533627
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around LOC100533627 on UCSC Golden Path with GeneCards custom track

Genomic Location for LOC100533627 Gene

Chromosome:
1
Start:
46,891,526 bp from pter
End:
46,892,830 bp from pter
Size:
1,305 bases
Orientation:
Plus strand

Genomic View for LOC100533627 Gene

Genes around LOC100533627 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC100533627 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100533627 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC100533627 Gene

Proteins for LOC100533627 Gene

Post-translational modifications for LOC100533627 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC100533627 Gene

Domains & Families for LOC100533627 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC100533627 Gene

Function for LOC100533627 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100533627 Gene

Localization for LOC100533627 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for LOC100533627 Gene

Pathways & Interactions for LOC100533627 Gene

SuperPathways for LOC100533627 Gene

No Data Available

Interacting Proteins for LOC100533627 Gene

Gene Ontology (GO) - Biological Process for LOC100533627 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC100533627 Gene

Drugs & Compounds for LOC100533627 Gene

No Compound Related Data Available

Transcripts for LOC100533627 Gene

mRNA/cDNA for LOC100533627 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100533627 Gene

No ASD Table

Relevant External Links for LOC100533627 Gene

GeneLoc Exon Structure for
LOC100533627

Expression for LOC100533627 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC100533627 Gene

mRNA differential expression in normal tissues according to GTEx for LOC100533627 Gene

This gene is overexpressed in Adipose - Subcutaneous (x6.3), Breast - Mammary Tissue (x6.2), and Nerve - Tibial (x4.7).
genes like me logo Genes that share expression patterns with LOC100533627: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100533627 Gene

Orthologs for LOC100533627 Gene

Evolution for LOC100533627 Gene

ENSEMBL:
Gene Tree for LOC100533627 (if available)
TreeFam:
Gene Tree for LOC100533627 (if available)

No data available for Orthologs for LOC100533627 Gene

Paralogs for LOC100533627 Gene

No data available for Paralogs for LOC100533627 Gene

Variants for LOC100533627 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Relevant External Links for LOC100533627 Gene

Disorders for LOC100533627 Gene

No disorders were found for LOC100533627 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC100533627 Gene

Publications for LOC100533627 Gene

No publications were found for LOC100533627 Gene.

Products for LOC100533627 Gene

Sources for LOC100533627 Gene

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