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Aliases for LOC100507156 Gene

Subcategory (RNA class) for LOC100507156 Gene

ncRNA

Quality Score for this RNA gene is

2

Aliases for LOC100507156 Gene

  • Uncharacterized LOC100507156 3
  • RP11-177H13.2 5

External Ids for LOC100507156 Gene

Previous GeneCards Identifiers for LOC100507156 Gene

  • GC08P023193

Summaries for LOC100507156 Gene

GeneCards Summary for LOC100507156 Gene

LOC100507156 (Uncharacterized LOC100507156) is an RNA Gene, and is affiliated with the ncRNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC100507156 Gene

Genomics for LOC100507156 Gene

Regulatory Elements for LOC100507156 Gene

Enhancers for LOC100507156 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH08G022387 1.6 Ensembl ENCODE dbSUPER 14.2 -947.4 -947425 3.0 HNRNPUL1 HDGF PKNOX1 CREB3L1 ZFP64 ARID4B SIN3A DMAP1 ZNF2 YY1 ENSG00000253200 LOC100507156 POLR3D PHYHIP C8orf58 FGF17 BIN3 PPP3CC PIWIL2 SLC39A14
GH08G022450 0.9 dbSUPER 22.9 -885.7 -885693 0.9 ZNF493 ZFP64 ZEB1 ZNF354C ZNF202 ZNF654 ZNF680 ZNF426 OVOL3 REST SORBS3 ENSG00000253200 POLR3D LOC100507156 LOC107986927 LOC100507071 PPP3CC ENSG00000251034 C8orf58 BTF3P3
GH08G023301 1.6 Ensembl ENCODE dbSUPER 11.8 -31.3 -31319 5.7 HDGF FOXA2 PKNOX1 MLX ARID4B SIN3A DMAP1 FEZF1 ZNF2 YY1 R3HCC1 CHMP7 ENSG00000253200 BIN3 LOC100507156 TNFRSF10A LOC389641 ENTPD4 LOC107986927 C8orf58
GH08G022603 1.2 ENCODE 14.2 -731.2 -731163 3.6 CREB3L1 FEZF1 DMAP1 YY1 SLC30A9 ZNF143 ZNF263 SP3 NFYC TBX21 C8orf58 LOC100507156 PHYHIP FGF17 PDLIM2 PPP3CC RNU6-336P CCAR2 ENSG00000253200
GH08G023295 1.3 Ensembl ENCODE dbSUPER 11.9 -38.3 -38326 4.2 CTCF ZNF146 JUN SIN3A MAX RAD21 RFX5 ZNF316 POLR2A ZNF143 R3HCC1 CHMP7 LOXL2 LOC100507156 GC08P023294
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around LOC100507156 on UCSC Golden Path with GeneCards custom track

Genomic Location for LOC100507156 Gene

Chromosome:
8
Start:
23,336,171 bp from pter
End:
23,366,125 bp from pter
Size:
29,955 bases
Orientation:
Plus strand

Genomic View for LOC100507156 Gene

Genes around LOC100507156 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC100507156 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100507156 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC100507156 Gene

Proteins for LOC100507156 Gene

Post-translational modifications for LOC100507156 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC100507156 Gene

Domains & Families for LOC100507156 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC100507156 Gene

Function for LOC100507156 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100507156 Gene

Localization for LOC100507156 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for LOC100507156 Gene

Pathways & Interactions for LOC100507156 Gene

SuperPathways for LOC100507156 Gene

No Data Available

Interacting Proteins for LOC100507156 Gene

Gene Ontology (GO) - Biological Process for LOC100507156 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC100507156 Gene

Drugs & Compounds for LOC100507156 Gene

No Compound Related Data Available

Transcripts for LOC100507156 Gene

mRNA/cDNA for LOC100507156 Gene

(2) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for LOC100507156 Gene

Uncharacterized LOC100507156:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100507156 Gene

No ASD Table

Relevant External Links for LOC100507156 Gene

GeneLoc Exon Structure for
LOC100507156

Expression for LOC100507156 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC100507156 Gene

SOURCE GeneReport for Unigene cluster for LOC100507156 Gene:

Hs.661130
genes like me logo Genes that share expression patterns with LOC100507156: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100507156 Gene

Orthologs for LOC100507156 Gene

Evolution for LOC100507156 Gene

ENSEMBL:
Gene Tree for LOC100507156 (if available)
TreeFam:
Gene Tree for LOC100507156 (if available)

No data available for Orthologs for LOC100507156 Gene

Paralogs for LOC100507156 Gene

No data available for Paralogs for LOC100507156 Gene

Variants for LOC100507156 Gene

Sequence variations from dbSNP and Humsavar for LOC100507156 Gene

SNP ID Clin Chr 08 pos Sequence Context AA Info Type
rs1000009643 -- 23,336,503(+) GAGTG(A/G)AGTGG intron-variant, nc-transcript-variant
rs1000035305 -- 23,360,027(+) CAAAA(A/C)GCGAG intron-variant
rs1000069650 -- 23,342,664(+) CTGAC(C/T)TCATG intron-variant
rs1000100330 -- 23,342,791(+) TGTTG(C/T)CCAGG intron-variant
rs1000214257 -- 23,362,413(+) TATAC(C/T)TAACA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for LOC100507156 Gene

Variant ID Type Subtype PubMed ID
dgv7139n100 CNV loss 25217958
esv25599 CNV loss 19812545
nsv1017570 CNV gain 25217958
nsv1026345 CNV gain 25217958
nsv1134912 CNV tandem duplication 24896259
nsv610778 CNV loss 21841781
nsv6118 CNV insertion 18451855
nsv831268 CNV gain 17160897

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Relevant External Links for LOC100507156 Gene

Disorders for LOC100507156 Gene

Relevant External Links for LOC100507156

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
LOC100507156

No disorders were found for LOC100507156 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC100507156 Gene

Publications for LOC100507156 Gene

No publications were found for LOC100507156 Gene.

Products for LOC100507156 Gene

Sources for LOC100507156 Gene

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