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LOC100507156 Gene(RNA Gene)

Uncharacterized LOC100507156

GCID:
GC08P023336
GIFtS:
11
Genes Participants
UDN Logo

Aliases for LOC100507156 Gene

Subcategory (RNA class) for LOC100507156 Gene

ncRNA

Quality Score for this RNA gene is

2

Aliases for LOC100507156 Gene

  • Uncharacterized LOC100507156 3
  • AC090197.1 5

External Ids for LOC100507156 Gene

Previous GeneCards Identifiers for LOC100507156 Gene

  • GC08P023193

Summaries for LOC100507156 Gene

GeneCards Summary for LOC100507156 Gene

LOC100507156 (Uncharacterized LOC100507156) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC100507156 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC100507156 Gene

Genomics for LOC100507156 Gene

Products:

  1. Regulatory Element

GeneHancer (GH) Regulatory Elements for LOC100507156 Gene

Promoters and enhancers for LOC100507156 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH08I023334 Enhancer 1.3 FANTOM5 Ensembl ENCODE dbSUPER 556.1 +1.6 1642 6.1 HDGF CTCF MAX EBF1 RAD21 RELA ZNF664 ZFHX2 POLR2A EGR1 LOC100507156 LOXL2 ENTPD4 PIR45078
GH08I022603 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 14.9 -731.2 -731163 3.6 FEZF1 DMAP1 IRF4 YY1 SLC30A9 ZNF213 E2F8 ZNF143 SP3 NFYC CCAR2 GC08P022605 PIR54985 PIR42411 PIR62346 C8orf58 ENSG00000253200 FAM160B2 ENTPD4 BIN3
GH08I022450 Enhancer 0.9 dbSUPER 23.6 -885.7 -885693 0.9 ZNF493 ZNF529 ZFP64 MZF1 ZEB1 ZNF213 ZNF354C ZNF202 ZNF654 ZNF680 ENSG00000253200 FAM160B2 BMP1 SORBS3 POLR3D C8orf58 CCAR2 LOC107986927 LOXL2 XPO7
GH08I023301 Enhancer 1.2 Ensembl ENCODE dbSUPER 11.8 -31.3 -31318 5.7 TFAP4 FOXA2 SAP130 KLF17 MAX ZIC2 ZFHX2 ZNF316 POLR2A EGR1 R3HCC1 CHMP7 LOC100507156 TNFRSF10A LOC389641 LOXL2 GC08P023294
GH08I022352 Enhancer 1.3 Ensembl ENCODE dbSUPER 10.4 -983.0 -982996 2.3 FOXA2 SIN3A FEZF1 IRF4 FOS DEK TSHZ1 ZNF518A SSRP1 MAFF PIWIL2 CCAR2 PHYHIP ENSG00000253200 FGF17 SORBS3 LOC101929237 C8orf58 LOC100507156 ENSG00000251034
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LOC100507156 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC100507156 Gene

Genomic Locations for LOC100507156 Gene
chr8:23,336,171-23,366,125
(GRCh38/hg38)
Size:
29,955 bases
Orientation:
Plus strand
chr8:23,193,684-23,223,638
(GRCh37/hg19)

Genomic View for LOC100507156 Gene

Genes around LOC100507156 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC100507156 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100507156 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for LOC100507156 Gene

Proteins for LOC100507156 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for LOC100507156 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC100507156 Gene

Domains & Families for LOC100507156 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC100507156 Gene

Function for LOC100507156 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for LOC100507156 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100507156 Gene

Localization for LOC100507156 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100507156 Gene

Pathways & Interactions for LOC100507156 Gene

SuperPathways for LOC100507156 Gene

PathCards logo More details on SuperPathways for LOC100507156
No Data Available

Interacting Proteins for LOC100507156 Gene

Gene Ontology (GO) - Biological Process for LOC100507156 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC100507156 Gene

Drugs & Compounds for LOC100507156 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for LOC100507156 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for LOC100507156 Gene

(2) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for LOC100507156 Gene

Uncharacterized LOC100507156:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100507156 Gene

No ASD Table

Relevant External Links for LOC100507156 Gene

GeneLoc Exon Structure for
LOC100507156

Expression for LOC100507156 Gene

Products:

  1. Primer

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC100507156 Gene

mRNA expression in normal human tissues for LOC100507156 Gene
mRNA expression by GTEx for LOC100507156 Gene

SOURCE GeneReport for Unigene cluster for LOC100507156 Gene:

Hs.661130
genes like me logo Genes that share expression patterns with LOC100507156: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100507156 Gene

Orthologs for LOC100507156 Gene

Evolution for LOC100507156 Gene

ENSEMBL:
Gene Tree for LOC100507156 (if available)
TreeFam:
Gene Tree for LOC100507156 (if available)

No data available for Orthologs for LOC100507156 Gene

Paralogs for LOC100507156 Gene

No data available for Paralogs for LOC100507156 Gene

Variants for LOC100507156 Gene

Sequence variations from dbSNP and Humsavar for LOC100507156 Gene

SNP ID Clin Chr 08 pos Variation AA Info Type
rs1000009643 -- 23,336,503(+) G/A non_coding_transcript_variant
rs1000035305 -- 23,360,027(+) A/C intron_variant
rs1000069650 -- 23,342,664(+) C/T intron_variant
rs1000100330 -- 23,342,791(+) C/T intron_variant
rs1000214257 -- 23,362,413(+) T/C intron_variant

Structural Variations from Database of Genomic Variants (DGV) for LOC100507156 Gene

Variant ID Type Subtype PubMed ID
dgv7139n100 CNV loss 25217958
esv25599 CNV loss 19812545
nsv1017570 CNV gain 25217958
nsv1026345 CNV gain 25217958
nsv1134912 CNV tandem duplication 24896259
nsv610778 CNV loss 21841781
nsv6118 CNV insertion 18451855
nsv831268 CNV gain 17160897

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Additional Variant Information for LOC100507156 Gene

Disorders for LOC100507156 Gene

Additional Disease Information for LOC100507156

ATLAS of Genetics and Cytogenetics in Oncology and Haematology

No disorders were found for LOC100507156 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC100507156 Gene

Publications for LOC100507156 Gene

No publications were found for LOC100507156 Gene.

Products for LOC100507156 Gene

Sources for LOC100507156 Gene

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