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Aliases for LOC100507053 Gene

Subcategory (RNA class) for LOC100507053 Gene

ncRNA

Quality Score for this RNA gene is

2

Aliases for LOC100507053 Gene

  • Uncharacterized LOC100507053 3
  • AP002026.1 5

External Ids for LOC100507053 Gene

Previous GeneCards Identifiers for LOC100507053 Gene

  • GC04P100011

Summaries for LOC100507053 Gene

GeneCards Summary for LOC100507053 Gene

LOC100507053 (Uncharacterized LOC100507053) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC100507053 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC100507053 Gene

Genomics for LOC100507053 Gene

GeneHancer (GH) Regulatory Elements for LOC100507053 Gene

Promoters and enhancers for LOC100507053 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH04I099086 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 556.6 +0.4 424 6.5 SMAD1 FOXA2 ARNT ARID4B SIN3A DMAP1 ZNF2 ZBTB7B YY1 POLR2B ADH5 LOC100507053 ENSG00000272777 ADH4 PIR42405
GH04I098994 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE 20.3 -92.0 -91969 5.1 HDGF PKNOX1 FOXA2 ARNT ARID4B SIN3A DMAP1 ZNF2 YY1 POLR2B METAP1 MIR3684 ENSG00000272777 LOC100507053 EIF4E ADH5 RNU7-149P ADH1A ADH4 ENSG00000263923
GH04I099143 Promoter/Enhancer 1.3 EPDnew ENCODE 22.9 +55.5 55511 1.5 ELF3 FOXA2 RAD21 YY1 CREM THAP11 HMG20B RXRA CEBPB ELF1 ADH4 LOC100507053 ADH5 ADH1A ADH6 PIR42405
GH04I099402 Enhancer 1.6 FANTOM5 Ensembl ENCODE dbSUPER 10.9 +315.6 315605 3.6 PKNOX1 FOXA2 ARID4B DMAP1 IRF4 YY1 ARID2 ZNF207 ZNF143 ATF7 LOC102723576 ADH4 ADH6 LOC100507053 PCNAP1 ADH5 ADH1A ADH1B ADH1C
GH04I099202 Enhancer 0.7 Ensembl ENCODE 20.6 +113.9 113917 1.1 FOXA2 RXRA RAD21 NR2F2 LOC100507053 ADH6 ADH1A PCNAP2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LOC100507053 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC100507053 Gene

Genomic Locations for LOC100507053 Gene
chr4:99,088,857-99,301,356
(GRCh38/hg38)
Size:
212,500 bases
Orientation:
Plus strand

Genomic View for LOC100507053 Gene

Genes around LOC100507053 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC100507053 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100507053 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC100507053 Gene

Proteins for LOC100507053 Gene

Post-translational modifications for LOC100507053 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC100507053 Gene

Domains & Families for LOC100507053 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC100507053 Gene

Function for LOC100507053 Gene

Phenotypes From GWAS Catalog for LOC100507053 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100507053 Gene

Localization for LOC100507053 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100507053 Gene

Pathways & Interactions for LOC100507053 Gene

SuperPathways for LOC100507053 Gene

No Data Available

Interacting Proteins for LOC100507053 Gene

Gene Ontology (GO) - Biological Process for LOC100507053 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC100507053 Gene

Drugs & Compounds for LOC100507053 Gene

No Compound Related Data Available

Transcripts for LOC100507053 Gene

mRNA/cDNA for LOC100507053 Gene

(3) Additional mRNA sequences :
(7) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for LOC100507053 Gene

Uncharacterized LOC100507053:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100507053 Gene

No ASD Table

Relevant External Links for LOC100507053 Gene

GeneLoc Exon Structure for
LOC100507053

Expression for LOC100507053 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC100507053 Gene

SOURCE GeneReport for Unigene cluster for LOC100507053 Gene:

Hs.635084
genes like me logo Genes that share expression patterns with LOC100507053: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100507053 Gene

Orthologs for LOC100507053 Gene

Evolution for LOC100507053 Gene

ENSEMBL:
Gene Tree for LOC100507053 (if available)
TreeFam:
Gene Tree for LOC100507053 (if available)

No data available for Orthologs for LOC100507053 Gene

Paralogs for LOC100507053 Gene

No data available for Paralogs for LOC100507053 Gene

Variants for LOC100507053 Gene

Sequence variations from dbSNP and Humsavar for LOC100507053 Gene

SNP ID Clin Chr 04 pos Variation AA Info Type
rs1000005369 -- 99,187,821(+) G/A intron_variant
rs1000024019 -- 99,099,687(+) G/C intron_variant
rs1000026086 -- 99,097,279(+) G/T intron_variant
rs10000357 -- 99,178,785(+) G/C intron_variant
rs1000054449 -- 99,279,931(+) G/A intron_variant

Structural Variations from Database of Genomic Variants (DGV) for LOC100507053 Gene

Variant ID Type Subtype PubMed ID
dgv160n6 CNV deletion 16902084
dgv2863n106 CNV deletion 24896259
dgv2864n106 CNV deletion 24896259
dgv330e215 CNV deletion 23714750
dgv5345n100 CNV gain 25217958
esv1007608 CNV deletion 20482838
esv1010884 CNV deletion 20482838
esv1493994 CNV deletion 17803354
esv1673129 CNV insertion 17803354
esv1947060 CNV deletion 18987734
esv2146603 CNV deletion 18987734
esv2456401 CNV deletion 19546169
esv2569136 CNV deletion 19546169
esv2586628 CNV deletion 19546169
esv2659036 CNV deletion 23128226
esv2728033 CNV deletion 23290073
esv2728034 CNV deletion 23290073
esv2728035 CNV deletion 23290073
esv3299495 CNV deletion 24192839
esv3299606 CNV deletion 24192839
esv3367192 CNV insertion 20981092
esv3446965 CNV insertion 20981092
esv3564321 CNV deletion 23714750
esv3564322 CNV deletion 23714750
esv3575764 CNV gain 25503493
esv3601553 CNV loss 21293372
esv3997 CNV loss 18987735
esv4382 CNV loss 18987735
esv5687 CNV loss 19470904
esv7314 CNV loss 19470904
nsv1002574 CNV loss 25217958
nsv1002927 CNV gain 25217958
nsv1072000 CNV deletion 25765185
nsv1073787 CNV deletion 25765185
nsv1117111 CNV deletion 24896259
nsv1128084 CNV deletion 24896259
nsv1139290 CNV deletion 24896259
nsv1151760 CNV deletion 26484159
nsv1151911 CNV deletion 26484159
nsv289679 CNV deletion 16902084
nsv956339 CNV deletion 24416366
nsv967774 CNV duplication 23825009
nsv980233 CNV duplication 23825009

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Additional Variant Information for LOC100507053 Gene

Disorders for LOC100507053 Gene

Additional Disease Information for LOC100507053

No disorders were found for LOC100507053 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC100507053 Gene

Publications for LOC100507053 Gene

  1. Genetic determinants influencing human serum metabolome among African Americans. (PMID: 24625756) Yu B … Boerwinkle E (PLoS genetics 2014) 3 58
  2. Association of genome-wide variation with highly sensitive cardiac troponin-T levels in European Americans and Blacks: a meta-analysis from atherosclerosis risk in communities and cardiovascular health studies. (PMID: 23247143) Yu B … CARDIoGRAM Consortium (Circulation. Cardiovascular genetics 2013) 3 58
  3. Generalization of variants identified by genome-wide association studies for electrocardiographic traits in African Americans. (PMID: 23534349) Jeff JM … Crawford DC (Annals of human genetics 2013) 3 58
  4. Discovery and refinement of loci associated with lipid levels. (PMID: 24097068) Willer CJ … Global Lipids Genetics Consortium (Nature genetics 2013) 3 58
  5. Genome-wide association analyses of esophageal squamous cell carcinoma in Chinese identify multiple susceptibility loci and gene-environment interactions. (PMID: 22960999) Wu C … Lin D (Nature genetics 2012) 3 58

Products for LOC100507053 Gene

Sources for LOC100507053 Gene

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