Aliases for LOC100506281 Gene
Subcategory (RNA class) for LOC100506281 Gene
ncRNA
Quality Score for this RNA gene is
2
External Ids for LOC100506281 Gene
- Entrez Gene: 100506281
- Ensembl: ENSG00000240338
Previous GeneCards Identifiers for LOC100506281 Gene
- GC16P075260
- GC16U901586
Summaries for LOC100506281 Gene
GeneCards Summary for LOC100506281 Gene
LOC100506281 (Uncharacterized LOC100506281) is an RNA Gene, and is affiliated with the ncRNA class.
Additional gene information for LOC100506281 Gene
No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC100506281 Gene
Genomics for LOC100506281 Gene
GeneHancer (GH) Regulatory Elements for LOC100506281 Gene
Promoters and enhancers for LOC100506281 Gene
| GeneHancer (GH) Identifier | GH Type | GH Score |
GH Sources | Gene Association Score | Total Score | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites |
Gene Targets |
|---|---|---|---|---|---|---|---|---|---|---|
| GH16I075199 | Enhancer | 1 | Ensembl ENCODE | 12.8 | -26.5 | -26474 | 0.4 | FOXA2 RB1 ARID4B RAD21 RFX5 ZNF121 EGR1 ARID2 ZNF143 RUNX3 | LOC100506281 ENSG00000252122 BCAR1 RPS4Y1P1 CTRB2 | |
| GH16I075198 | Enhancer | 0.7 | Ensembl ENCODE | 13.1 | -27.7 | -27706 | 0.6 | SP1 KLF1 CTBP1 ETV1 GABPB1 NRF1 ZNF133 | BCAR1 CTRB1 LOC100506281 ENSG00000252122 CTRB2 ZFP1 RPS4Y1P1 | |
| GH16I075201 | Enhancer | 0.5 | ENCODE | 12.8 | -24.6 | -24603 | 0.3 | ZNF335 NR2F1 IKZF1 EBF1 IKZF2 SPI1 | BCAR1 LOC100506281 ENSG00000252122 RPS4Y1P1 CTRB2 | |
| GH16I075200 | Enhancer | 0.2 | ENCODE | 12.8 | -25.2 | -25204 | 0.1 | LOC100506281 ENSG00000252122 BCAR1 RPS4Y1P1 CTRB2 | ||
| GH16I075222 | Enhancer | 0.6 | ENCODE dbSUPER | 0.8 | -3.5 | -3516 | 0.2 | L3MBTL2 MAX MGA | LOC100506281 CTRB1 |
- Elite GeneHancer and/or Elite GeneHancer-gene association
Download GeneHancer data dump
GeneHancers around LOC100506281 on UCSC Golden Path with GeneCards custom track
Regulatory Element Products
Genomic Locations for LOC100506281 Gene
Genomic Locations for LOC100506281 Gene
- chr16:75,226,074-75,228,203
- (GRCh38/hg38)
- Size:
- 2,130 bases
- Orientation:
- Plus strand
- chr16:75,259,972-75,262,093
- (GRCh37/hg19)
Genomic View for LOC100506281 Gene
Genes around LOC100506281 on UCSC Golden Path with GeneCards custom track
- Cytogenetic band:
-
- 16q23.1 by Ensembl
- 16q23.1 by Entrez Gene
LOC100506281 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for LOC100506281 Gene
Proteins for LOC100506281 Gene
Post-translational modifications for LOC100506281 Gene
No Post-translational modifications
Antibody Products
- Search GeneTex for Antibodies for LOC100506281
Protein Products
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for LOC100506281
- Origene Custom Protein Services for LOC100506281
- Search GeneTex for Proteins for LOC100506281
No data available for DME Specific Peptides for LOC100506281 Gene
Domains & Families for LOC100506281 Gene
Graphical View of Domain Structure for InterPro Entry
No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC100506281 Gene
Function for LOC100506281 Gene
Phenotypes From GWAS Catalog for LOC100506281 Gene
Animal Model Products
- Taconic Biosciences: Generate A Custom CRISPR Mouse Model For Your Study
- Cyagen custom Knockout/knockin (KOKI) mouse models for LOC100506281
-
- Search ViGene Biosciences for LOC100506281
CRISPR Products
- Browse CRISPR knockouts for LOC100506281
miRNA Products
- Search ViGene Biosciences for LOC100506281
Inhibitory RNA Products
- Search ViGene Biosciences for LOC100506281
Clone Products
- GenScript: Custom all cDNA clones Services for LOC100506281
- VectorBuilder custom plasmid, inducible vectors for LOC100506281
- VectorBuilder custom lentivirus, adenovirus, AAV vector/virus packaging for LOC100506281
-
VectorBuilder Other custom vectors
- Mammalian expression: PiggyBac
- Mammalian Tet-on expression: plasmid
- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100506281 Gene
Localization for LOC100506281 Gene
No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100506281 Gene
Transcripts for LOC100506281 Gene
mRNA/cDNA for LOC100506281 Gene
- (4) Ensembl transcripts including schematic representations, and UCSC links where relevant :
CRISPR Products
- Browse CRISPR knockouts for LOC100506281
miRNA Products
- Search ViGene Biosciences for LOC100506281
Inhibitory RNA Products
- Search ViGene Biosciences for LOC100506281
Clone Products
- GenScript: Custom all cDNA clones Services for LOC100506281
- VectorBuilder custom plasmid, inducible vectors for LOC100506281
- VectorBuilder custom lentivirus, adenovirus, AAV vector/virus packaging for LOC100506281
-
VectorBuilder Other custom vectors
- Mammalian expression: PiggyBac
- Mammalian Tet-on expression: plasmid
- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
Relevant External Links for LOC100506281 Gene
- GeneLoc Exon Structure for
- LOC100506281
Expression for LOC100506281 Gene
mRNA differential expression in normal tissues according to GTEx for LOC100506281 Gene
This gene is overexpressed in Pancreas (x52.8).
Primer Products
No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100506281 Gene
Orthologs for LOC100506281 Gene
Evolution for LOC100506281 Gene
- ENSEMBL:
- Gene Tree for LOC100506281 (if available)
- TreeFam:
- Gene Tree for LOC100506281 (if available)
No data available for Orthologs for LOC100506281 Gene
Paralogs for LOC100506281 Gene
No data available for Paralogs for LOC100506281 Gene
Variants for LOC100506281 Gene
| SNP ID | Clin | Chr 16 pos | Variation | AA Info | Type |
|---|---|---|---|---|---|
| rs193920783 | uncertain-significance, Malignant tumor of prostate | 75,224,707(+) | C/T | upstream_transcript_variant | |
| rs1000173696 | -- | 75,227,532(+) | C/G/T | intron_variant | |
| rs1000310856 | -- | 75,227,434(+) | C/G/T | intron_variant | |
| rs1000561055 | -- | 75,228,637(+) | G/A | downstream_transcript_variant | |
| rs1000928515 | -- | 75,227,567(+) | G/A | intron_variant |
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Additional Variant Information for LOC100506281 Gene
Disorders for LOC100506281 Gene
Additional Disease Information for LOC100506281
No disorders were found for LOC100506281 Gene.
No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC100506281 Gene
Publications for LOC100506281 Gene
No publications were found for LOC100506281 Gene.
Products for LOC100506281 Gene
- Browse R&D Systems for Antibodies
- Browse R&D Systems for Human Recombinant Proteins
- Browse R&D Systems for biochemical assays
- Browse Primary Antibodies
- Browse Proteins and Enzymes
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- Browse cDNA Clones
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- Browse Small Molecules
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- Custom Antibody Services
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- Custom Assay Services
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for LOC100506281
- Origene Custom Protein Services for LOC100506281
- Browse OriGene Inhibitory RNA Products For LOC100506281
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- Browse CRISPR knockouts for LOC100506281
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
- Browse OriGene miRNA Products For LOC100506281
- GenScript: Custom all cDNA clones Services for LOC100506281
- GenScript Custom Purified and Recombinant Proteins Services for LOC100506281
- GenScript Custom Assay Services for LOC100506281
- GenScript Custom overexpressing Cell Line Services for LOC100506281
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- Design optimal peptide antigens
- CloneReady with Over 120,000 Genes
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- Cloud-Clone Corp. disease models service
- Browse cDNA clones at Cloud-Clone Corp.
- Browse primers at Cloud-Clone Corp.
- Cloud-Clone Corp. primary cells service
- Cyagen custom Knockout/knockin (KOKI) mouse models for LOC100506281
- VectorBuilder custom plasmid, inducible vectors for LOC100506281
- VectorBuilder custom lentivirus, adenovirus, AAV vector/virus packaging for LOC100506281
- VectorBuilder Other custom vectors
- Mammalian expression: PiggyBac
- Mammalian Tet-on expression: plasmid
- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
- Search GeneTex for Antibodies for LOC100506281
- Search GeneTex for Proteins for LOC100506281
Sources for LOC100506281 Gene
- (1) GeneCards
- (2) HGNC
- (3) EntrezGene
- (4) Swiss-Prot
- (5) Ensembl
- (6) OMIM
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) GO
- (12) TrEMBL
- (13) InterPro
- (14) ProtoNet
- (15) Blocks
- (16) MGI
- (17) IUBMB
- (18) KEGG
- (19) MINT
- (20) STRING
- (21) IntAct
- (22) Novoseek
- (23) PharmGKB
- (24) DrugBank
- (25) HMDB
- (26) UniGene
- (27) AceView
- (28) ASD
- (29) ECgene
- (30) GeneAnnot
- (31) CGAP SAGE
- (32) SOURCE
- (33) HomoloGene
- (34) PanEnsembl
- (35) euGenes
- (36) SGD
- (37) FlyBase
- (38) WormBase
- (39) Pseudogene
- (40) DGV
- (41) dbSNP
- (42) GenAtlas
- (43) HGMD
- (44) GAD
- (45) BGMUT
- (46) HuGE
- (47) Atlas
- (48) Cell Signaling Technology
- (49) GenBank
- (50) H-invDB
- (51) HORDE
- (52) HUGE
- (53) IMGT
- (54) Leiden
- (55) miRBase
- (56) DME
- (57) OriGene
- (58) PubMed
- (59) R&D Systems
- (60) TGDB
- (61) Tocris
- (62) Abcam
- (63) Novus Biologicals
- (64) ProSpec
- (65) Sino Biological
- (66) GenScript
- (67) Qiagen
- (68) Cloud-Clone Corp.
- (69) OCA
- (70) Proteopedia
- (71) MOPED
- (72) neXtProt
- (73) Reactome
- (74) GeneGo (Thomson Reuters)
- (75) fRNAdb
- (76) DISEASES
- (77) SIMAP
- (78) GenomeRNAi
- (79) LifeMap
- (80) miRTarBase
- (81) MalaCards
- (82) Invitrogen
- (83) BitterDB
- (84) Vector BioLabs
- (85) ESI-BIO
- (86) RefSeq
- (87) BioSystems
- (88) MaxQB
- (89) IUPHAR
- (90) BioGPS
- (91) Illumina
- (92) COMPARTMENTS
- (93) HOMER
- (94) PaxDb
- (95) ApexBio
- (96) Addgene
- (97) antibodies-online
- (98) CYP
- (99) NONCODE
- (100) SwitchGear Genomics
- (101) TreeFam
- (102) PathCards
- (103) GeneReviews
- (104) GeneTex
- (105) Taconic Biosciences
- (106) GTEx
- (107) ProteomicsDB
- (108) SCBT
- (109) DGIdb
- (110) ClinicalTrials
- (111) FDA Approved Drugs
- (112) RVIS
- (113) SIGNOR
- (114) diseasecard
- (115) NIH Rare Diseases
- (116) Orphanet
- (117) UMLS
- (118) GTR
- (119) Disease Ontology
- (120) Genetics Home Reference
- (121) MeSH
- (122) MedlinePlus
- (123) CDC
- (124) NINDS
- (125) NCBI Bookshelf
- (126) ClinVar
- (127) Gene Damage Index
- (128) ViGene Biosciences
- (129) HPO
- (130) UDN
- (131) VISTA
- (132) FANTOM5
- (133) ENCODE
- (134) ProSci
- (135) Horizon
- (136) NURSA
- (137) IID
- (138) Cyagen
- (139) VectorBuilder
- (140) SNPedia
- (141) BRCA Exchange
- (142) St John's Lab
- (143) CIViC
- (144) ProteoGenix
- (145) dbSUPER
- (146) TISSUES
- (147) Gene ORGANizer
- (148) abm
- (149) CrownBio
- (150) Human Protein Atlas
- (151) GWAS Catalog
- (152) Monarch Initiative
- (153) DataMed
- (154) HumanCyc
- (155) genomics-online
- (156) UCNEbase
- (157) EPDnew