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Aliases for LOC100506281 Gene

Subcategory (RNA class) for LOC100506281 Gene

ncRNA

Quality Score for this RNA gene is

2

Aliases for LOC100506281 Gene

  • Uncharacterized LOC100506281 3
  • AC009078.2 5

External Ids for LOC100506281 Gene

Previous GeneCards Identifiers for LOC100506281 Gene

  • GC16P075260
  • GC16U901586

Summaries for LOC100506281 Gene

GeneCards Summary for LOC100506281 Gene

LOC100506281 (Uncharacterized LOC100506281) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC100506281 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC100506281 Gene

Genomics for LOC100506281 Gene

GeneHancer (GH) Regulatory Elements for LOC100506281 Gene

Promoters and enhancers for LOC100506281 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH16I075199 Enhancer 1 Ensembl ENCODE 12.8 -26.5 -26474 0.4 FOXA2 RB1 ARID4B RAD21 RFX5 ZNF121 EGR1 ARID2 ZNF143 RUNX3 LOC100506281 ENSG00000252122 BCAR1 RPS4Y1P1 CTRB2
GH16I075198 Enhancer 0.7 Ensembl ENCODE 13.1 -27.7 -27706 0.6 SP1 KLF1 CTBP1 ETV1 GABPB1 NRF1 ZNF133 BCAR1 CTRB1 LOC100506281 ENSG00000252122 CTRB2 ZFP1 RPS4Y1P1
GH16I075201 Enhancer 0.5 ENCODE 12.8 -24.6 -24603 0.3 ZNF335 NR2F1 IKZF1 EBF1 IKZF2 SPI1 BCAR1 LOC100506281 ENSG00000252122 RPS4Y1P1 CTRB2
GH16I075200 Enhancer 0.2 ENCODE 12.8 -25.2 -25204 0.1 LOC100506281 ENSG00000252122 BCAR1 RPS4Y1P1 CTRB2
GH16I075222 Enhancer 0.6 ENCODE dbSUPER 0.8 -3.5 -3516 0.2 L3MBTL2 MAX MGA LOC100506281 CTRB1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LOC100506281 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC100506281 Gene

Genomic Locations for LOC100506281 Gene
chr16:75,226,074-75,228,203
(GRCh38/hg38)
Size:
2,130 bases
Orientation:
Plus strand
chr16:75,259,972-75,262,093
(GRCh37/hg19)

Genomic View for LOC100506281 Gene

Genes around LOC100506281 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC100506281 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100506281 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC100506281 Gene

Proteins for LOC100506281 Gene

Post-translational modifications for LOC100506281 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC100506281 Gene

Domains & Families for LOC100506281 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC100506281 Gene

Function for LOC100506281 Gene

Phenotypes From GWAS Catalog for LOC100506281 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100506281 Gene

Localization for LOC100506281 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100506281 Gene

Pathways & Interactions for LOC100506281 Gene

SuperPathways for LOC100506281 Gene

No Data Available

Interacting Proteins for LOC100506281 Gene

Gene Ontology (GO) - Biological Process for LOC100506281 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC100506281 Gene

Drugs & Compounds for LOC100506281 Gene

No Compound Related Data Available

Transcripts for LOC100506281 Gene

mRNA/cDNA for LOC100506281 Gene

(4) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100506281 Gene

No ASD Table

Relevant External Links for LOC100506281 Gene

GeneLoc Exon Structure for
LOC100506281

Expression for LOC100506281 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC100506281 Gene

mRNA differential expression in normal tissues according to GTEx for LOC100506281 Gene

This gene is overexpressed in Pancreas (x52.8).
genes like me logo Genes that share expression patterns with LOC100506281: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100506281 Gene

Orthologs for LOC100506281 Gene

Evolution for LOC100506281 Gene

ENSEMBL:
Gene Tree for LOC100506281 (if available)
TreeFam:
Gene Tree for LOC100506281 (if available)

No data available for Orthologs for LOC100506281 Gene

Paralogs for LOC100506281 Gene

No data available for Paralogs for LOC100506281 Gene

Variants for LOC100506281 Gene

Sequence variations from dbSNP and Humsavar for LOC100506281 Gene

SNP ID Clin Chr 16 pos Variation AA Info Type
rs193920783 uncertain-significance, Malignant tumor of prostate 75,224,707(+) C/T upstream_transcript_variant
rs1000173696 -- 75,227,532(+) C/G/T intron_variant
rs1000310856 -- 75,227,434(+) C/G/T intron_variant
rs1000561055 -- 75,228,637(+) G/A downstream_transcript_variant
rs1000928515 -- 75,227,567(+) G/A intron_variant

Structural Variations from Database of Genomic Variants (DGV) for LOC100506281 Gene

Variant ID Type Subtype PubMed ID
nsv149 OTHER inversion 15895083
nsv516504 CNV gain+loss 19592680
nsv523405 CNV loss 19592680
nsv7286 OTHER inversion 18451855
nsv833282 CNV gain+loss 17160897

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Additional Variant Information for LOC100506281 Gene

Disorders for LOC100506281 Gene

Additional Disease Information for LOC100506281

No disorders were found for LOC100506281 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC100506281 Gene

Publications for LOC100506281 Gene

No publications were found for LOC100506281 Gene.

Products for LOC100506281 Gene

Sources for LOC100506281 Gene

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