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Aliases for LOC100506248 Gene

Aliases for LOC100506248 Gene

  • Prothymosin Alpha 3
  • RP11-267J23.4 5

External Ids for LOC100506248 Gene

Previous GeneCards Identifiers for LOC100506248 Gene

  • GC12P012266
  • GC12U902212

Summaries for LOC100506248 Gene

GeneCards Summary for LOC100506248 Gene

LOC100506248 (Prothymosin Alpha) is a Protein Coding gene. Among its related pathways are Epstein-Barr virus infection.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC100506248 Gene

Genomics for LOC100506248 Gene

Regulatory Elements for LOC100506248 Gene

Enhancers for LOC100506248 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH12G012557 1.9 FANTOM5 Ensembl ENCODE dbSUPER 11.1 +450.1 450113 7.0 FOXA2 PKNOX1 CREB3L1 ARNT WRNIP1 ARID4B SIN3A DMAP1 FEZF1 ZNF2 DDX47 CREBL2 LOC100506248 GPR19 RPL13AP20 CDKN1B ENSG00000255670 DUSP16 BCL2L14 PIR41199
GH12G012778 1.5 Ensembl ENCODE dbSUPER 11.1 +668.6 668628 1.9 FOXA2 FEZF1 FOS ZNF263 TSHZ1 MAFF ZNF610 GLIS1 STAT3 ZNF300 DDX47 LOC100506248 BORCS5 GC12M012777 PIR39111
GH12G012834 1.5 Ensembl ENCODE dbSUPER 11.1 +727.6 727582 8.9 PKNOX1 SIN3A FEZF1 BRCA1 ZNF2 GTF3C2 ZNF121 GLIS2 GATA2 KLF7 DDX47 RPL13AP20 GPRC5A LOC100506248 MIR614 ENSG00000256011 LOC100506314 GPRC5D GC12P012833 RPL37AP9
GH12G012396 1.6 Ensembl ENCODE dbSUPER 10.4 +287.9 287871 3.9 PKNOX1 FOXA2 ARID4B SIN3A FEZF1 ZNF2 YY1 FOS SP3 SP5 DDX47 HTR7P1 LRP6 CREBL2 GPR19 ENSG00000240424 DUSP16 LOC100506248 MANSC1 CDKN1B
GH12G012356 1.4 ENCODE dbSUPER 11.5 +246.8 246772 2.9 HDGF PKNOX1 WRNIP1 ARID4B SIN3A DMAP1 YY1 ZNF143 ZNF207 FOS DDX47 LRP6 LOC100506248 RPL13AP20 LOH12CR2 MANSC1 BORCS5 PIR62067
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around LOC100506248 on UCSC Golden Path with GeneCards custom track

Promoters for LOC100506248 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000048875 299 599 SCRT1 CEBPB

Genomic Location for LOC100506248 Gene

Chromosome:
12
Start:
12,111,002 bp from pter
End:
12,111,688 bp from pter
Size:
687 bases
Orientation:
Plus strand

Genomic View for LOC100506248 Gene

Genes around LOC100506248 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC100506248 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100506248 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC100506248 Gene

Proteins for LOC100506248 Gene

Post-translational modifications for LOC100506248 Gene

No Post-translational modifications

Other Protein References for LOC100506248 Gene

No data available for DME Specific Peptides for LOC100506248 Gene

Domains & Families for LOC100506248 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC100506248 Gene

Function for LOC100506248 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100506248 Gene

Localization for LOC100506248 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for LOC100506248 Gene

Pathways & Interactions for LOC100506248 Gene

SuperPathways for LOC100506248 Gene

SuperPathway Contained pathways
1 Epstein-Barr virus infection
genes like me logo Genes that share pathways with LOC100506248: view

Pathways by source for LOC100506248 Gene

1 KEGG pathway for LOC100506248 Gene

Interacting Proteins for LOC100506248 Gene

Gene Ontology (GO) - Biological Process for LOC100506248 Gene

None

No data available for SIGNOR curated interactions for LOC100506248 Gene

Drugs & Compounds for LOC100506248 Gene

No Compound Related Data Available

Transcripts for LOC100506248 Gene

mRNA/cDNA for LOC100506248 Gene

(3) REFSEQ mRNAs :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100506248 Gene

No ASD Table

Relevant External Links for LOC100506248 Gene

GeneLoc Exon Structure for
LOC100506248

Expression for LOC100506248 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC100506248 Gene

genes like me logo Genes that share expression patterns with LOC100506248: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100506248 Gene

Orthologs for LOC100506248 Gene

Evolution for LOC100506248 Gene

ENSEMBL:
Gene Tree for LOC100506248 (if available)
TreeFam:
Gene Tree for LOC100506248 (if available)

No data available for Orthologs for LOC100506248 Gene

Paralogs for LOC100506248 Gene

No data available for Paralogs for LOC100506248 Gene

Variants for LOC100506248 Gene

Sequence variations from dbSNP and Humsavar for LOC100506248 Gene

SNP ID Clin Chr 12 pos Sequence Context AA Info Type
rs1004233338 -- 12,111,260(+) AGACG(C/T)CCCTG upstream-variant-2KB, reference, missense
rs1004300744 -- 12,111,303(+) CCGGA(A/G)GCTGA upstream-variant-2KB, reference, synonymous-codon
rs1005301138 -- 12,110,002(+) TTACC(C/T)AGGAT upstream-variant-2KB
rs1005412755 -- 12,109,668(+) CAGCC(C/T)GGTCG upstream-variant-2KB
rs1005415536 -- 12,110,282(+) TGGAG(G/T)TTCAC upstream-variant-2KB

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Relevant External Links for LOC100506248 Gene

Disorders for LOC100506248 Gene

No disorders were found for LOC100506248 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC100506248 Gene

Publications for LOC100506248 Gene

No publications were found for LOC100506248 Gene.

Products for LOC100506248 Gene

Sources for LOC100506248 Gene

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