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Aliases for LOC100506178 Gene

Subcategory (RNA class) for LOC100506178 Gene

ncRNA

Quality Score for this RNA gene is

2

Aliases for LOC100506178 Gene

  • Uncharacterized LOC100506178 3
  • AC002480.3 5

External Ids for LOC100506178 Gene

Summaries for LOC100506178 Gene

GeneCards Summary for LOC100506178 Gene

LOC100506178 (Uncharacterized LOC100506178) is an RNA Gene, and is affiliated with the ncRNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC100506178 Gene

Genomics for LOC100506178 Gene

Regulatory Elements for LOC100506178 Gene

Enhancers for LOC100506178 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH07G021771 2.3 VISTA ENCODE 4.6 -791.0 -790974 1.2 PKNOX1 ATF1 TAL1 ETV1 CHD7 FOSL1 TCF12 GATA2 NCOR1 TRIM24 CDCA7L LOC100506178 PIR48952 GC07P021597
GH07G022575 1.8 FANTOM5 Ensembl ENCODE dbSUPER 5.6 +14.6 14598 3.9 TBP PKNOX1 CBX3 RAD21 CHAMP1 RFX5 YY1 GATA2 CBX5 SMARCC2 IL6 LOC541472 STEAP1B TRA2A LOC100506178 ENSG00000232949
GH07G022559 1.4 Ensembl ENCODE dbSUPER 5.9 +0.1 109 7.0 PKNOX1 ATF1 FOXA2 ARNT SIN3A GATA2 FOS DEK ZNF263 REST LOC541472 IL6 FAM126A LOC100506178 ENSG00000232949
GH07G022724 1.3 ENCODE dbSUPER 6.1 +163.7 163705 5.1 PKNOX1 SIN3A FEZF1 ZNF766 GLIS2 CBX5 FOS DEK REST TBX21 LOC541472 FAM126A STEAP1B LOC100506178 IL6
GH07G022571 1 ENCODE dbSUPER 5.6 +9.5 9463 2.4 SIX4 NFIB JUN CEBPG CTBP1 GATA3 FOS RCOR1 EZH2 MAZ LOC541472 IL6 STEAP1B LOC100506178 ENSG00000232949
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around LOC100506178 on UCSC Golden Path with GeneCards custom track

Genomic Location for LOC100506178 Gene

Chromosome:
7
Start:
22,563,337 bp from pter
End:
22,573,998 bp from pter
Size:
10,662 bases
Orientation:
Plus strand

Genomic View for LOC100506178 Gene

Genes around LOC100506178 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC100506178 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100506178 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC100506178 Gene

Proteins for LOC100506178 Gene

Post-translational modifications for LOC100506178 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC100506178 Gene

Domains & Families for LOC100506178 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC100506178 Gene

Function for LOC100506178 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100506178 Gene

Localization for LOC100506178 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for LOC100506178 Gene

Pathways & Interactions for LOC100506178 Gene

SuperPathways for LOC100506178 Gene

No Data Available

Interacting Proteins for LOC100506178 Gene

Gene Ontology (GO) - Biological Process for LOC100506178 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC100506178 Gene

Drugs & Compounds for LOC100506178 Gene

No Compound Related Data Available

Transcripts for LOC100506178 Gene

mRNA/cDNA for LOC100506178 Gene

(2) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for LOC100506178 Gene

Uncharacterized LOC100506178:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100506178 Gene

No ASD Table

Relevant External Links for LOC100506178 Gene

GeneLoc Exon Structure for
LOC100506178

Expression for LOC100506178 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC100506178 Gene

SOURCE GeneReport for Unigene cluster for LOC100506178 Gene:

Hs.668122
genes like me logo Genes that share expression patterns with LOC100506178: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100506178 Gene

Orthologs for LOC100506178 Gene

Evolution for LOC100506178 Gene

ENSEMBL:
Gene Tree for LOC100506178 (if available)
TreeFam:
Gene Tree for LOC100506178 (if available)

No data available for Orthologs for LOC100506178 Gene

Paralogs for LOC100506178 Gene

No data available for Paralogs for LOC100506178 Gene

Variants for LOC100506178 Gene

Sequence variations from dbSNP and Humsavar for LOC100506178 Gene

SNP ID Clin Chr 07 pos Sequence Context AA Info Type
rs1000004329 -- 22,564,809(+) GACTC(C/G)CAGGG intron-variant
rs1000040998 -- 22,571,709(+) ATCCA(C/T)AGCCC intron-variant
rs1000425275 -- 22,569,381(+) ATCTT(C/T)GTCTC intron-variant
rs1000559052 -- 22,571,374(+) ATAAT(A/G)AGAAG intron-variant
rs1000976679 -- 22,566,404(+) CCTCA(A/G)GACTT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for LOC100506178 Gene

Variant ID Type Subtype PubMed ID
nsv7393 OTHER inversion 18451855

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Relevant External Links for LOC100506178 Gene

Disorders for LOC100506178 Gene

Relevant External Links for LOC100506178

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
LOC100506178

No disorders were found for LOC100506178 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC100506178 Gene

Publications for LOC100506178 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3 64
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 64

Products for LOC100506178 Gene

Sources for LOC100506178 Gene

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