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Aliases for LOC100505921 Gene

Subcategory (RNA class) for LOC100505921 Gene

ncRNA

Quality Score for this RNA gene is

2

Aliases for LOC100505921 Gene

  • Uncharacterized LOC100505921 3
  • AC006042.2 5

External Ids for LOC100505921 Gene

Previous GeneCards Identifiers for LOC100505921 Gene

  • GC07M008035

Summaries for LOC100505921 Gene

GeneCards Summary for LOC100505921 Gene

LOC100505921 (Uncharacterized LOC100505921) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC100505921 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC100505921 Gene

Genomics for LOC100505921 Gene

Regulatory Elements for LOC100505921 Gene

Enhancers for LOC100505921 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH07H007943 1.4 FANTOM5 Ensembl ENCODE 11.6 +24.8 24762 2.9 HDGF PKNOX1 TBL1XR1 BMI1 BATF ATF7 ETV6 RUNX3 CREM IKZF2 ENSG00000234141 GLCCI1 LOC100505921 PIR33188
GH07H007794 1.2 Ensembl ENCODE 10.4 +172.9 172873 5.8 TBP PKNOX1 FOXA2 INSM2 FEZF1 RAD21 ZEB1 TCF12 ZNF766 GATA2 GLCCI1 LOC100505921 RPL23AP51 RNU6-534P
GH07H007815 1.1 Ensembl ENCODE 11.1 +153.5 153469 1.9 TBL1XR1 MAX BMI1 BATF RELA POLR2A EED FOS ATF7 ETV6 GLCCI1 LOC100505921 RPL23AP51 RNU6-534P
GH07H007761 1.1 Ensembl ENCODE 10.7 +207.8 207778 2.2 TBP CTCF PKNOX1 IRF2 RB1 RAD21 RFX5 FOSL1 CTBP1 ZNF766 GLCCI1 LOC100505921 RPL23AP51 RNU6-534P
GH07H007731 1.1 Ensembl ENCODE 10.2 +237.4 237436 2.6 ELF3 FOXA2 MLX ARID4B FEZF1 THRB RARA SLC30A9 CREM MIXL1 GLCCI1 LOC100505921 RPL23AP51 RPA3 LOC100533631
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around LOC100505921 on UCSC Golden Path with GeneCards custom track

Promoters for LOC100505921 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000324743 403 3401 HDGF PKNOX1 ZFP64 ARID4B SIN3A ZNF2 YY1 SLC30A9 ZNF143 ZNF207
ENSR00000208378 -1797 201 PRDM6

Genomic Locations for LOC100505921 Gene

Genomic Locations for LOC100505921 Gene
chr7:7,949,839-7,969,903
(GRCh38/hg38)
Size:
20,065 bases
Orientation:
Minus strand
chr7:7,997,814-8,009,534
(GRCh37/hg19)

Genomic View for LOC100505921 Gene

Genes around LOC100505921 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC100505921 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100505921 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC100505921 Gene

Proteins for LOC100505921 Gene

Post-translational modifications for LOC100505921 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC100505921 Gene

Domains & Families for LOC100505921 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC100505921 Gene

Function for LOC100505921 Gene

Phenotypes From GWAS Catalog for LOC100505921 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100505921 Gene

Localization for LOC100505921 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100505921 Gene

Pathways & Interactions for LOC100505921 Gene

SuperPathways for LOC100505921 Gene

No Data Available

Interacting Proteins for LOC100505921 Gene

Gene Ontology (GO) - Biological Process for LOC100505921 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC100505921 Gene

Drugs & Compounds for LOC100505921 Gene

No Compound Related Data Available

Transcripts for LOC100505921 Gene

mRNA/cDNA for LOC100505921 Gene

(4) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for LOC100505921 Gene

Uncharacterized LOC100505921:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100505921 Gene

No ASD Table

Relevant External Links for LOC100505921 Gene

GeneLoc Exon Structure for
LOC100505921

Expression for LOC100505921 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC100505921 Gene

SOURCE GeneReport for Unigene cluster for LOC100505921 Gene:

Hs.634989
genes like me logo Genes that share expression patterns with LOC100505921: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100505921 Gene

Orthologs for LOC100505921 Gene

Evolution for LOC100505921 Gene

ENSEMBL:
Gene Tree for LOC100505921 (if available)
TreeFam:
Gene Tree for LOC100505921 (if available)

No data available for Orthologs for LOC100505921 Gene

Paralogs for LOC100505921 Gene

No data available for Paralogs for LOC100505921 Gene

Variants for LOC100505921 Gene

Sequence variations from dbSNP and Humsavar for LOC100505921 Gene

SNP ID Clin Chr 07 pos Sequence Context AA Info Type
rs37973 drug-response 7,968,245(+) GTTCA(A/G)TGCAG intron-variant, upstream-variant-2KB
rs1000017711 -- 7,963,625(+) TGTGA(C/G)AACAG intron-variant
rs1000122046 -- 7,966,216(+) CACTG(A/C)GTTTA intron-variant
rs1000172364 -- 7,955,954(+) ATCTG(C/T)ATGGA nc-transcript-variant
rs1000392706 -- 7,956,330(+) CTGGG(A/G)AAAAA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for LOC100505921 Gene

Variant ID Type Subtype PubMed ID
nsv606048 CNV loss 21841781
nsv525502 CNV loss 19592680
nsv1030180 CNV loss 25217958
esv3440301 CNV insertion 20981092
esv2761144 CNV gain+loss 21179565
esv2752177 CNV gain 17911159
dgv6249n100 CNV gain 25217958

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Relevant External Links for LOC100505921 Gene

Disorders for LOC100505921 Gene

Relevant External Links for LOC100505921

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
LOC100505921

No disorders were found for LOC100505921 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC100505921 Gene

Publications for LOC100505921 Gene

  1. The DNA sequence of human chromosome 7. (PMID: 12853948) Hillier LW … Wilson RK (Nature 2003) 3 60

Products for LOC100505921 Gene

Sources for LOC100505921 Gene

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