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Aliases for LOC100505915 Gene

Subcategory (RNA class) for LOC100505915 Gene

ncRNA

Quality Score for this RNA gene is

2

Aliases for LOC100505915 Gene

  • Uncharacterized LOC100505915 3
  • RP11-72I8.1 5

External Ids for LOC100505915 Gene

Previous GeneCards Identifiers for LOC100505915 Gene

  • GC16P015188
  • GC16U901603

Summaries for LOC100505915 Gene

GeneCards Summary for LOC100505915 Gene

LOC100505915 (Uncharacterized LOC100505915) is an RNA Gene, and is affiliated with the ncRNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC100505915 Gene

Genomics for LOC100505915 Gene

Regulatory Elements for LOC100505915 Gene

Enhancers for LOC100505915 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH16G015970 1.9 FANTOM5 Ensembl ENCODE dbSUPER 33 +879.9 879889 8.2 ZFP64 ETS1 CBX5 GATA2 ZNF143 FOS ZNF263 ZNF202 NFYC REST LOC100505915 ABCC1 PKD1P6 PKD1P1 FOPNL NPIPA5 RRN3 ENSG00000227827 NDE1 GC16P016010
GH16G015588 2.1 FANTOM5 Ensembl ENCODE dbSUPER 27.4 +496.9 496912 5.4 MLX CREB3L1 FEZF1 DMAP1 YY1 SLC30A9 ZNF143 ZNF548 ZNF263 SP3 ENSG00000263335 LOC100505915 RRN3 PKD1P6 NDE1 PKD1P1 BFAR ENSG00000183458 MARF1 C16orf45
GH16G014095 1.2 Ensembl ENCODE 45.9 -997.5 -997504 3.8 FOXA2 ZNF493 ZFP64 ZNF133 FEZF1 FOS ZNF202 ZHX2 REST PPARG LOC100505915 ENSG00000183458 RRN3 NPIPA3 BFAR NPIPA2 ENSG00000261819 MKL2 ENSG00000276564
GH16G015140 1.7 FANTOM5 Ensembl ENCODE dbSUPER 29.2 +50.1 50123 8.5 ZNF76 KLF17 ZNF121 GLIS2 ZNF366 SCRT2 SP3 ZEB2 ZFP69B ZNF341 LOC100505915 PDXDC1 NPIPP1 NPIPA2 GC16P015150 MIR6511B2
GH16G015792 1.1 dbSUPER 32.5 +699.3 699268 3.4 HDGF PKNOX1 ARID4B SIN3A DMAP1 ZNF2 YY1 ZNF766 ZNF143 ZNF207 ENSG00000183458 PKD1P1 LOC100505915 ENSG00000183889 ENSG00000261819 NPIPA5 PKD1P6 ENSG00000227827 FOPNL ENSG00000207425
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around LOC100505915 on UCSC Golden Path with GeneCards custom track

Promoters for LOC100505915 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000083773 -211 1601 MLX CREB3L1 ARID4B SIN3A DMAP1 ZNF2 ZBTB7B YY1 SLC30A9 ZNF207

Genomic Location for LOC100505915 Gene

Chromosome:
16
Start:
15,094,411 bp from pter
End:
15,109,197 bp from pter
Size:
14,787 bases
Orientation:
Plus strand

Genomic View for LOC100505915 Gene

Genes around LOC100505915 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC100505915 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100505915 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC100505915 Gene

Proteins for LOC100505915 Gene

Post-translational modifications for LOC100505915 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC100505915 Gene

Domains & Families for LOC100505915 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC100505915 Gene

Function for LOC100505915 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100505915 Gene

Localization for LOC100505915 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for LOC100505915 Gene

Pathways & Interactions for LOC100505915 Gene

SuperPathways for LOC100505915 Gene

No Data Available

Interacting Proteins for LOC100505915 Gene

Gene Ontology (GO) - Biological Process for LOC100505915 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC100505915 Gene

Drugs & Compounds for LOC100505915 Gene

No Compound Related Data Available

Transcripts for LOC100505915 Gene

mRNA/cDNA for LOC100505915 Gene

(2) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for LOC100505915 Gene

Uncharacterized LOC100505915:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100505915 Gene

No ASD Table

Relevant External Links for LOC100505915 Gene

GeneLoc Exon Structure for
LOC100505915

Expression for LOC100505915 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC100505915 Gene

SOURCE GeneReport for Unigene cluster for LOC100505915 Gene:

Hs.678758
genes like me logo Genes that share expression patterns with LOC100505915: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100505915 Gene

Orthologs for LOC100505915 Gene

Evolution for LOC100505915 Gene

ENSEMBL:
Gene Tree for LOC100505915 (if available)
TreeFam:
Gene Tree for LOC100505915 (if available)

No data available for Orthologs for LOC100505915 Gene

Paralogs for LOC100505915 Gene

No data available for Paralogs for LOC100505915 Gene

Variants for LOC100505915 Gene

Sequence variations from dbSNP and Humsavar for LOC100505915 Gene

SNP ID Clin Chr 16 pos Sequence Context AA Info Type
rs1000038947 -- 15,107,822(+) TCACA(A/C)CTAAC intron-variant, nc-transcript-variant
rs1000674666 -- 15,100,488(+) AGATT(G/T)TGGGC intron-variant
rs1000924341 -- 15,105,079(+) ACACA(A/G)GAGTG intron-variant
rs1001530849 -- 15,103,501(+) AGTGA(-/TATT)TATTT intron-variant
rs1001794160 -- 15,099,065(+) CCAAA(A/G)CACAG intron-variant

Structural Variations from Database of Genomic Variants (DGV) for LOC100505915 Gene

Variant ID Type Subtype PubMed ID
dgv2755n100 CNV gain 25217958
dgv2765n100 CNV gain 25217958
dgv2770n100 CNV loss 25217958
dgv4922n54 CNV loss 21841781
esv1168353 CNV deletion 17803354
esv2676791 CNV deletion 23128226
esv2714014 CNV deletion 23290073
esv2758632 CNV gain+loss 17122850
esv2762254 CNV gain+loss 21179565
esv3570354 CNV gain 25503493
esv3892797 CNV gain 25118596
nsv1036298 CNV gain 25217958
nsv1038955 CNV loss 25217958
nsv1042130 CNV gain 25217958
nsv1050325 CNV loss 25217958
nsv1053467 CNV loss 25217958
nsv511045 OTHER complex 20534489
nsv7277 OTHER inversion 18451855
nsv977910 CNV duplication 23825009
nsv984375 CNV duplication 23825009

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Relevant External Links for LOC100505915 Gene

Disorders for LOC100505915 Gene

Relevant External Links for LOC100505915

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
LOC100505915

No disorders were found for LOC100505915 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC100505915 Gene

Publications for LOC100505915 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 64

Products for LOC100505915 Gene

Sources for LOC100505915 Gene

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