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Aliases for LOC100505622 Gene

Subcategory (RNA class) for LOC100505622 Gene

ncRNA

Quality Score for this RNA gene is

2

Aliases for LOC100505622 Gene

  • Uncharacterized LOC100505622 3
  • CTC-378H22.1 3 5

External Ids for LOC100505622 Gene

Previous GeneCards Identifiers for LOC100505622 Gene

  • GC19P042637

Summaries for LOC100505622 Gene

GeneCards Summary for LOC100505622 Gene

LOC100505622 (Uncharacterized LOC100505622) is an RNA Gene, and is affiliated with the ncRNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC100505622 Gene

Genomics for LOC100505622 Gene

Regulatory Elements for LOC100505622 Gene

Enhancers for LOC100505622 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH19G042205 1.8 FANTOM5 Ensembl ENCODE dbSUPER 10.9 +74.9 74862 2.9 NFIB KLF17 ZNF2 ZEB1 ZNF121 GLIS2 EGR1 ZNF366 FOS CREM GRIK5 LOC100505622 GSK3A DEDD2 ARHGEF1 CEACAM8 POU2F2 CEACAM3
GH19G042196 1.5 Ensembl ENCODE dbSUPER 11.3 +68.2 68249 8.8 HDGF PKNOX1 ATF1 CREB3L1 ARNT AGO1 WRNIP1 SIN3A TCF12 ZNF121 MEGF8 GRIK5 GSK3A LOC100505622 CIC PAFAH1B3 PRR19 CNFN POU2F2 DEDD2
GH19G042183 1.3 Ensembl ENCODE dbSUPER 11.9 +52.3 52338 1.9 HDGF CTCF RB1 SREBF2 TEAD4 RAD21 TEAD3 ZNF766 ZNF316 ZNF143 LOC100505622 ZNF526 DEDD2 LIPE-AS1 LIPE GRIK5 POU2F2 ENSG00000259436
GH19G042432 1.5 Ensembl ENCODE dbSUPER 9.8 +301.0 300956 1.8 FOXA2 MLX ZNF493 ARID4B ZNF48 YY1 ZNF766 GATA2 ZNF143 YY2 CNFN RNU4-60P POU2F2 LOC100505622 MEGF8 GC19P042435 LIPE
GH19G042108 1.1 ENCODE dbSUPER 12.3 -23.8 -23839 0.5 HDGF RB1 TBL1XR1 ZSCAN4 WRNIP1 SIN3A KLF17 ZNF2 RAD21 ZNF143 LOC100505622 POU2F2 MEGF8 CIC PAFAH1B3 PRR19 GSK3A CNFN PIR55136
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around LOC100505622 on UCSC Golden Path with GeneCards custom track

Promoters for LOC100505622 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000109766 -255 1001 PKNOX1 MXI1 WRNIP1 SIN3A ZMYM3 EBF1 HIC1 POLR2A RELB IKZF2
ENSR00000288480 645 401 ARID4B ZNF48 GLIS2 ZNF143 ZNF207 KLF7 KLF13 ZNF263 SP3 SP5

Genomic Location for LOC100505622 Gene

Chromosome:
19
Start:
42,132,555 bp from pter
End:
42,137,099 bp from pter
Size:
4,545 bases
Orientation:
Plus strand

Genomic View for LOC100505622 Gene

Genes around LOC100505622 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC100505622 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100505622 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC100505622 Gene

Proteins for LOC100505622 Gene

Post-translational modifications for LOC100505622 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC100505622 Gene

Domains & Families for LOC100505622 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC100505622 Gene

Function for LOC100505622 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100505622 Gene

Localization for LOC100505622 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for LOC100505622 Gene

Pathways & Interactions for LOC100505622 Gene

SuperPathways for LOC100505622 Gene

No Data Available

Interacting Proteins for LOC100505622 Gene

Gene Ontology (GO) - Biological Process for LOC100505622 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC100505622 Gene

Drugs & Compounds for LOC100505622 Gene

No Compound Related Data Available

Transcripts for LOC100505622 Gene

mRNA/cDNA for LOC100505622 Gene

(3) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for LOC100505622 Gene

Uncharacterized LOC100505622:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100505622 Gene

No ASD Table

Relevant External Links for LOC100505622 Gene

GeneLoc Exon Structure for
LOC100505622

Expression for LOC100505622 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC100505622 Gene

mRNA differential expression in normal tissues according to GTEx for LOC100505622 Gene

This gene is overexpressed in Whole Blood (x13.2), Spleen (x7.8), and Small Intestine - Terminal Ileum (x4.2).

SOURCE GeneReport for Unigene cluster for LOC100505622 Gene:

Hs.661761
genes like me logo Genes that share expression patterns with LOC100505622: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100505622 Gene

Orthologs for LOC100505622 Gene

Evolution for LOC100505622 Gene

ENSEMBL:
Gene Tree for LOC100505622 (if available)
TreeFam:
Gene Tree for LOC100505622 (if available)

No data available for Orthologs for LOC100505622 Gene

Paralogs for LOC100505622 Gene

No data available for Paralogs for LOC100505622 Gene

Variants for LOC100505622 Gene

Sequence variations from dbSNP and Humsavar for LOC100505622 Gene

SNP ID Clin Chr 19 pos Sequence Context AA Info Type
rs1000185771 -- 42,131,212(+) GCCCT(G/T)ACCTG intron-variant, upstream-variant-2KB
rs1000289252 -- 42,135,777(+) ATCCC(A/G)GCTCA intron-variant
rs1000395313 -- 42,137,512(+) ACACC(A/G)GGAGT intron-variant
rs1001333101 -- 42,136,755(+) ACAGC(C/T)AGCCA intron-variant, nc-transcript-variant
rs1001386938 -- 42,136,293(+) CATCC(C/T)CCCAC intron-variant

Structural Variations from Database of Genomic Variants (DGV) for LOC100505622 Gene

Variant ID Type Subtype PubMed ID
nsv1138707 CNV deletion 24896259
nsv2496 CNV insertion 18451855
nsv520239 CNV loss 19592680
nsv522854 CNV gain 19592680

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Relevant External Links for LOC100505622 Gene

Disorders for LOC100505622 Gene

Relevant External Links for LOC100505622

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
LOC100505622

No disorders were found for LOC100505622 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC100505622 Gene

Publications for LOC100505622 Gene

No publications were found for LOC100505622 Gene.

Products for LOC100505622 Gene

Sources for LOC100505622 Gene

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