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Aliases for LOC100420548 Gene

Aliases for LOC100420548 Gene

  • GTF2I Repeat Domain Containing 1 Pseudogene 3
  • AC005077.3 5

External Ids for LOC100420548 Gene

Previous GeneCards Identifiers for LOC100420548 Gene

  • GC07U902928
  • GC07P075804

Summaries for LOC100420548 Gene

GeneCards Summary for LOC100420548 Gene

LOC100420548 (GTF2I Repeat Domain Containing 1 Pseudogene) is a Pseudogene.

Additional gene information for LOC100420548 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC100420548 Gene

Genomics for LOC100420548 Gene

GeneHancer (GH) Regulatory Elements for LOC100420548 Gene

Promoters and enhancers for LOC100420548 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH07I076177 Enhancer 1.2 Ensembl ENCODE 0.8 +4.5 4506 0.9 ZFP64 ARID4B SIN3A ZNF2 SLC30A9 ZNF143 MXD4 REST KAT8 GLIS1 ENSG00000230882 MDH2 LOC100420548 GC07P076189 SRRM3
GH07I076185 Enhancer 0.4 ENCODE 0.4 +11.9 11892 1 POLR2A CHD2 ENSG00000230882 STYXL1 GC07P076189 LOC100420548 SRRM3
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LOC100420548 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC100420548 Gene

Genomic Locations for LOC100420548 Gene
chr7:76,173,733-76,177,205
(GRCh38/hg38)
Size:
3,473 bases
Orientation:
Plus strand
chr7:75,803,051-75,806,523
(GRCh37/hg19)

Genomic View for LOC100420548 Gene

Genes around LOC100420548 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC100420548 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100420548 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC100420548 Gene

Proteins for LOC100420548 Gene

Post-translational modifications for LOC100420548 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC100420548 Gene

Domains & Families for LOC100420548 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC100420548 Gene

Function for LOC100420548 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100420548 Gene

Localization for LOC100420548 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100420548 Gene

Pathways & Interactions for LOC100420548 Gene

SuperPathways for LOC100420548 Gene

No Data Available

Interacting Proteins for LOC100420548 Gene

Gene Ontology (GO) - Biological Process for LOC100420548 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC100420548 Gene

Drugs & Compounds for LOC100420548 Gene

No Compound Related Data Available

Transcripts for LOC100420548 Gene

mRNA/cDNA for LOC100420548 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100420548 Gene

No ASD Table

Relevant External Links for LOC100420548 Gene

GeneLoc Exon Structure for
LOC100420548

Expression for LOC100420548 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC100420548 Gene

mRNA differential expression in normal tissues according to GTEx for LOC100420548 Gene

This gene is overexpressed in Testis (x53.0).
genes like me logo Genes that share expression patterns with LOC100420548: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100420548 Gene

Orthologs for LOC100420548 Gene

Evolution for LOC100420548 Gene

ENSEMBL:
Gene Tree for LOC100420548 (if available)
TreeFam:
Gene Tree for LOC100420548 (if available)

No data available for Orthologs for LOC100420548 Gene

Paralogs for LOC100420548 Gene

No data available for Paralogs for LOC100420548 Gene

Variants for LOC100420548 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC100420548 Gene

Disorders for LOC100420548 Gene

No disorders were found for LOC100420548 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC100420548 Gene

Publications for LOC100420548 Gene

No publications were found for LOC100420548 Gene.

Products for LOC100420548 Gene

Sources for LOC100420548 Gene

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