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Aliases for LOC100420424 Gene

Subcategory (RNA class) for LOC100420424 Gene

lncRNA

Aliases for LOC100420424 Gene

  • Vac14, PIKFYVE Complex Component Pseudogene 3
  • AL122126.1 5

External Ids for LOC100420424 Gene

ORGUL Members for LOC100420424 Gene

Previous GeneCards Identifiers for LOC100420424 Gene

  • GC14U901153
  • GC14M009443
  • GC14M029326

Summaries for LOC100420424 Gene

GeneCards Summary for LOC100420424 Gene

LOC100420424 (Vac14, PIKFYVE Complex Component Pseudogene) is a Pseudogene, and is affiliated with the lncRNA class.

Additional gene information for LOC100420424 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC100420424 Gene

Genomics for LOC100420424 Gene

Regulatory Elements for LOC100420424 Gene

Enhancers for LOC100420424 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH14H028764 1.5 Ensembl ENCODE dbSUPER 14.7 +92.0 92015 4 ZNF133 FEZF1 GLI4 ZNF2 ZNF121 GLIS2 KLF7 ZNF202 SP3 REST LINC02327 BTF3P2 LOC100420424 ENSG00000258028 LINC02326 FOXG1-AS1 LINC01551
GH14H028876 1.6 FANTOM5 0.4 -17.6 -17598 0 PKNOX1 PRDM6 POLR2A ZNF10 ZBTB20 TRIM28 FOXG1 GC14P028876 LOC100420424
GH14H028830 0.8 ENCODE 0.3 +27.6 27587 0 TBL1XR1 BMI1 BATF TCF12 ATF7 ETV6 RUNX3 IKZF2 CREM JUNB LINC02327 LOC100420424
GH14H028831 0.8 ENCODE 0.3 +28.4 28417 0 HDAC1 PKNOX1 ATF1 GTF2E2 ETV1 CC2D1A ELK1 POLR2A EGR1 ATF7 LINC02327 LOC100420424
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around LOC100420424 on UCSC Golden Path with GeneCards custom track

Genomic Location for LOC100420424 Gene

Chromosome:
14
Start:
28,857,384 bp from pter
End:
28,858,701 bp from pter
Size:
1,318 bases
Orientation:
Minus strand

Genomic View for LOC100420424 Gene

Genes around LOC100420424 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC100420424 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100420424 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC100420424 Gene

Proteins for LOC100420424 Gene

Post-translational modifications for LOC100420424 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC100420424 Gene

Domains & Families for LOC100420424 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC100420424 Gene

Function for LOC100420424 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100420424 Gene

Localization for LOC100420424 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100420424 Gene

Pathways & Interactions for LOC100420424 Gene

SuperPathways for LOC100420424 Gene

No Data Available

Interacting Proteins for LOC100420424 Gene

Gene Ontology (GO) - Biological Process for LOC100420424 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC100420424 Gene

Drugs & Compounds for LOC100420424 Gene

No Compound Related Data Available

Transcripts for LOC100420424 Gene

mRNA/cDNA for LOC100420424 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100420424 Gene

No ASD Table

Relevant External Links for LOC100420424 Gene

GeneLoc Exon Structure for
LOC100420424

Expression for LOC100420424 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC100420424 Gene

mRNA differential expression in normal tissues according to GTEx for LOC100420424 Gene

This gene is overexpressed in Testis (x43.5) and Brain - Cortex (x9.5).
genes like me logo Genes that share expression patterns with LOC100420424: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100420424 Gene

Orthologs for LOC100420424 Gene

Evolution for LOC100420424 Gene

ENSEMBL:
Gene Tree for LOC100420424 (if available)
TreeFam:
Gene Tree for LOC100420424 (if available)

No data available for Orthologs for LOC100420424 Gene

Paralogs for LOC100420424 Gene

No data available for Paralogs for LOC100420424 Gene

Variants for LOC100420424 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Relevant External Links for LOC100420424 Gene

Disorders for LOC100420424 Gene

No disorders were found for LOC100420424 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC100420424 Gene

Publications for LOC100420424 Gene

No publications were found for LOC100420424 Gene.

Products for LOC100420424 Gene

Sources for LOC100420424 Gene

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