Free for academic non-profit institutions. Other users need a Commercial license

Aliases for LOC100419848 Gene

Subcategory (RNA class) for LOC100419848 Gene

lncRNA

Aliases for LOC100419848 Gene

  • Zinc Finger Protein 250 Pseudogene 3
  • AC012313.8 5

External Ids for LOC100419848 Gene

ORGUL Members for LOC100419848 Gene

Previous GeneCards Identifiers for LOC100419848 Gene

  • GC19U901407
  • GC19P059063
  • GC19P059074
  • GC19P059094
  • GC19P059105
  • GC19P059147
  • GC19P059204
  • GC19P059242
  • GC19P059291

Summaries for LOC100419848 Gene

GeneCards Summary for LOC100419848 Gene

LOC100419848 (Zinc Finger Protein 250 Pseudogene) is a Pseudogene, and is affiliated with the lncRNA class.

Additional gene information for LOC100419848 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC100419848 Gene

Genomics for LOC100419848 Gene

Regulatory Elements for LOC100419848 Gene

Enhancers for LOC100419848 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH19H058553 1.4 ENCODE dbSUPER 20.1 +116.7 116665 7.2 FEZF1 DMAP1 YY1 SLC30A9 ZNF143 SP3 NFYC ZC3H11A ZFP41 MEF2D TRIM28 ZNF606 MZF1 LOC100128398 ERVK3-1 ZNF134 ZNF417 ZNF329 ZNF324B ZNF418
GH19H058379 1.2 ENCODE 20.2 -59.4 -59363 2.9 ZFP64 FEZF1 DMAP1 SLC30A9 ZNF143 SP3 NFYC ZC3H11A ZFP41 ZNF610 LOC100128398 ZNF329 ZNF606 ZSCAN18 ZNF135 TRIM28 ZNF446 ZNF132 ZNF549 ZNF417
GH19H058325 1.2 ENCODE 20.1 -113.6 -113578 3.6 ZFP64 FEZF1 DMAP1 YY1 SLC30A9 ZNF416 ZNF143 SP3 NFYC ZFP41 ZNF134 ZNF606 ZNF549 ZNF446 ZNF17 ZNF135 ZNF417 ZNF324B TRIM28 LOC100128398
GH19H058517 2 FANTOM5 Ensembl ENCODE dbSUPER 10.5 +79.3 79261 4.9 MLX ZFP64 FEZF1 DMAP1 YY1 SLC30A9 ZNF416 ZNF143 SP3 NFYC ZNF324B ZNF446 TRIM28 ZNF134 ZNF549 ZNF417 ZNF606 ZNF135 MZF1 ZNF274
GH19H057476 1 ENCODE 14 -963.0 -962971 1.5 PKNOX1 FOXA2 ATF1 MLX ARID4B SIN3A DMAP1 YY1 ETS1 SLC30A9 ZNF773 ZNF417 VN1R1 ZNF446 ZNF606 ZNF134 ZNF17 ZNF543 ZNF548 ZNF274
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around LOC100419848 on UCSC Golden Path with GeneCards custom track

Promoters for LOC100419848 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000111876 -148 1001 PKNOX1 MXI1 SIN3A MAX BMI1 YY1 RFX5 ETS1 POLR2A ZNF143

Genomic Locations for LOC100419848 Gene

Genomic Locations for LOC100419848 Gene
chr19:58,440,448-58,445,849
(GRCh38/hg38)
Size:
5,402 bases
Orientation:
Plus strand
chr19:58,951,815-58,957,216
(GRCh37/hg19)

Genomic View for LOC100419848 Gene

Genes around LOC100419848 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC100419848 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100419848 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC100419848 Gene

Proteins for LOC100419848 Gene

Post-translational modifications for LOC100419848 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC100419848 Gene

Domains & Families for LOC100419848 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC100419848 Gene

Function for LOC100419848 Gene

Phenotypes From GWAS Catalog for LOC100419848 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100419848 Gene

Localization for LOC100419848 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100419848 Gene

Pathways & Interactions for LOC100419848 Gene

SuperPathways for LOC100419848 Gene

No Data Available

Interacting Proteins for LOC100419848 Gene

Gene Ontology (GO) - Biological Process for LOC100419848 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC100419848 Gene

Drugs & Compounds for LOC100419848 Gene

No Compound Related Data Available

Transcripts for LOC100419848 Gene

mRNA/cDNA for LOC100419848 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100419848 Gene

No ASD Table

Relevant External Links for LOC100419848 Gene

GeneLoc Exon Structure for
LOC100419848

Expression for LOC100419848 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC100419848 Gene

mRNA differential expression in normal tissues according to GTEx for LOC100419848 Gene

This gene is overexpressed in Testis (x5.7) and Pituitary (x4.2).
genes like me logo Genes that share expression patterns with LOC100419848: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100419848 Gene

Orthologs for LOC100419848 Gene

Evolution for LOC100419848 Gene

ENSEMBL:
Gene Tree for LOC100419848 (if available)
TreeFam:
Gene Tree for LOC100419848 (if available)

No data available for Orthologs for LOC100419848 Gene

Paralogs for LOC100419848 Gene

No data available for Paralogs for LOC100419848 Gene

Variants for LOC100419848 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Relevant External Links for LOC100419848 Gene

Disorders for LOC100419848 Gene

No disorders were found for LOC100419848 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC100419848 Gene

Publications for LOC100419848 Gene

No publications were found for LOC100419848 Gene.

Products for LOC100419848 Gene

Sources for LOC100419848 Gene

Content
Loading form....