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Aliases for LOC100289279 Gene

Aliases for LOC100289279 Gene

  • Contactin Associated Protein-Like 3-Like 3
  • CH17-296N19.1 5

External Ids for LOC100289279 Gene

Summaries for LOC100289279 Gene

GeneCards Summary for LOC100289279 Gene

LOC100289279 (Contactin Associated Protein-Like 3-Like) is a Protein Coding gene. An important paralog of this gene is CNTNAP3.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC100289279 Gene

Genomics for LOC100289279 Gene

Regulatory Elements for LOC100289279 Gene

Enhancers for LOC100289279 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH09G061333 0.2 Ensembl 0.7 +2.5 2509 0.2 LOC100289279 LOC100420438
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around LOC100289279 on UCSC Golden Path with GeneCards custom track

Promoters for LOC100289279 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000235233 609 2399

Genomic Location for LOC100289279 Gene

Chromosome:
9
Start:
61,330,592 bp from pter
End:
61,461,342 bp from pter
Size:
130,751 bases
Orientation:
Plus strand

Genomic View for LOC100289279 Gene

Genes around LOC100289279 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC100289279 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100289279 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC100289279 Gene

Proteins for LOC100289279 Gene

  • Protein details for LOC100289279 Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    A0A1B0GTE1
    Recommended name:
    Uncharacterized protein
    Protein Accession:
    A0A1B0GTE1

    Protein attributes for LOC100289279 Gene

    Size:
    492 amino acids
    Molecular mass:
    54649 Da
    Quaternary structure:
    No Data Available

neXtProt entry for LOC100289279 Gene

Post-translational modifications for LOC100289279 Gene

No Post-translational modifications

Other Protein References for LOC100289279 Gene

No data available for DME Specific Peptides for LOC100289279 Gene

Domains & Families for LOC100289279 Gene

Protein Domains for LOC100289279 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with LOC100289279: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC100289279 Gene

Function for LOC100289279 Gene

Animal Model Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100289279 Gene

Localization for LOC100289279 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for LOC100289279 Gene

Pathways & Interactions for LOC100289279 Gene

SuperPathways for LOC100289279 Gene

No Data Available

Interacting Proteins for LOC100289279 Gene

Gene Ontology (GO) - Biological Process for LOC100289279 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC100289279 Gene

Transcripts for LOC100289279 Gene

mRNA/cDNA for LOC100289279 Gene

(4) REFSEQ mRNAs :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100289279 Gene

No ASD Table

Relevant External Links for LOC100289279 Gene

GeneLoc Exon Structure for
LOC100289279

Expression for LOC100289279 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100289279 Gene

Orthologs for LOC100289279 Gene

Evolution for LOC100289279 Gene

ENSEMBL:
Gene Tree for LOC100289279 (if available)
TreeFam:
Gene Tree for LOC100289279 (if available)

No data available for Orthologs for LOC100289279 Gene

Paralogs for LOC100289279 Gene

Paralogs for LOC100289279 Gene

genes like me logo Genes that share paralogs with LOC100289279: view

Variants for LOC100289279 Gene

Sequence variations from dbSNP and Humsavar for LOC100289279 Gene

SNP ID Clin Chr 09 pos Sequence Context AA Info Type
rs1000104938 -- 61,406,631(-) CCCTG(C/G)CAGTG intron-variant
rs1000140106 -- 61,344,373(-) ACAGG(G/T)TCTGG intron-variant
rs1000184691 -- 61,375,628(-) TGGTA(C/T)CACAG intron-variant
rs1000226369 -- 61,370,475(-) CTTTT(C/T)TTTTT intron-variant
rs1000342225 -- 61,370,676(-) AGTAT(-/G)GGGGG intron-variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Relevant External Links for LOC100289279 Gene

Disorders for LOC100289279 Gene

No disorders were found for LOC100289279 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC100289279 Gene

Publications for LOC100289279 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3 64

Products for LOC100289279 Gene

Sources for LOC100289279 Gene

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