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Aliases for LOC100289117 Gene

Subcategory (RNA class) for LOC100289117 Gene

lncRNA

Aliases for LOC100289117 Gene

  • Ubiquitin A-52 Residue Ribosomal Protein Fusion Product 1 Pseudogene 3
  • AC008072.1 5

External Ids for LOC100289117 Gene

ORGUL Members for LOC100289117 Gene

Previous GeneCards Identifiers for LOC100289117 Gene

  • GC00U925192
  • GC02P225161

Summaries for LOC100289117 Gene

GeneCards Summary for LOC100289117 Gene

LOC100289117 (Ubiquitin A-52 Residue Ribosomal Protein Fusion Product 1 Pseudogene) is a Pseudogene, and is affiliated with the lncRNA class.

Additional gene information for LOC100289117 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC100289117 Gene

Genomics for LOC100289117 Gene

Regulatory Elements for LOC100289117 Gene

Enhancers for LOC100289117 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH02H224268 1.3 FANTOM5 Ensembl ENCODE 0.3 -26.3 -26255 1 FOXA2 ATF1 ZBTB21 BACH1 BMI1 RARA ZNF316 FOS ATF7 NFE2 LOC100289117 LOC105373908
GH02H224220 1.3 FANTOM5 Ensembl ENCODE 0.2 -73.3 -73272 2 JUN MAX RAD21 BATF RFX5 ZNF316 ZNF143 RCOR1 FOS NFE2 LOC105373908 LOC100289117
GH02H224331 0.6 ENCODE 0.3 +37.2 37169 0 ZNF217 CTBP1 GATA3 RCOR1 DPF2 TCF7L2 FOXA1 GC02M224363 LOC100289117
GH02H224357 0.8 ENCODE 0.2 +62.6 62629 0 CTCF CEBPG BATF RAD21 YY1 IRF9 SMC3 ZNF143 MIXL1 ZNF654 FAM124B GC02M224363 LOC100289117
GH02H224282 0.3 FANTOM5 0.4 -12.1 -12138 0 WDFY1 LOC100289117 LOC105373908
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around LOC100289117 on UCSC Golden Path with GeneCards custom track

Genomic Location for LOC100289117 Gene

Chromosome:
2
Start:
224,294,930 bp from pter
End:
224,295,753 bp from pter
Size:
824 bases
Orientation:
Plus strand

Genomic View for LOC100289117 Gene

Genes around LOC100289117 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC100289117 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100289117 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC100289117 Gene

Proteins for LOC100289117 Gene

Post-translational modifications for LOC100289117 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC100289117 Gene

Domains & Families for LOC100289117 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC100289117 Gene

Function for LOC100289117 Gene

Phenotypes From GWAS Catalog for LOC100289117 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100289117 Gene

Localization for LOC100289117 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100289117 Gene

Pathways & Interactions for LOC100289117 Gene

SuperPathways for LOC100289117 Gene

No Data Available

Interacting Proteins for LOC100289117 Gene

Gene Ontology (GO) - Biological Process for LOC100289117 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC100289117 Gene

Drugs & Compounds for LOC100289117 Gene

No Compound Related Data Available

Transcripts for LOC100289117 Gene

mRNA/cDNA for LOC100289117 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100289117 Gene

No ASD Table

Relevant External Links for LOC100289117 Gene

GeneLoc Exon Structure for
LOC100289117

Expression for LOC100289117 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC100289117 Gene

genes like me logo Genes that share expression patterns with LOC100289117: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100289117 Gene

Orthologs for LOC100289117 Gene

Evolution for LOC100289117 Gene

ENSEMBL:
Gene Tree for LOC100289117 (if available)
TreeFam:
Gene Tree for LOC100289117 (if available)

No data available for Orthologs for LOC100289117 Gene

Paralogs for LOC100289117 Gene

No data available for Paralogs for LOC100289117 Gene

Variants for LOC100289117 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Relevant External Links for LOC100289117 Gene

Disorders for LOC100289117 Gene

Relevant External Links for LOC100289117

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
LOC100289117

No disorders were found for LOC100289117 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC100289117 Gene

Publications for LOC100289117 Gene

No publications were found for LOC100289117 Gene.

Products for LOC100289117 Gene

Sources for LOC100289117 Gene

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