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Aliases for LOC100288562 Gene

Aliases for LOC100288562 Gene

  • Putative Exonuclease GOR 3

External Ids for LOC100288562 Gene

Summaries for LOC100288562 Gene

GeneCards Summary for LOC100288562 Gene

LOC100288562 (Putative Exonuclease GOR) is a Protein Coding gene. Among its related pathways are Ribosome biogenesis in eukaryotes. An important paralog of this gene is LOC101929601.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC100288562 Gene

Genomics for LOC100288562 Gene

Genomic Location for LOC100288562 Gene

Start:
85,790,325 bp from pter
End:
85,794,399 bp from pter
Size:
4,075 bases
Orientation:
Minus strand

Genomic View for LOC100288562 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for LOC100288562 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC100288562 Gene

Regulatory Elements for LOC100288562 Gene

Proteins for LOC100288562 Gene

Post-translational modifications for LOC100288562 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC100288562 Gene

Domains for LOC100288562 Gene

No data available for Gene Families , Protein Domains and UniProtKB/Swiss-Prot for LOC100288562 Gene

Function for LOC100288562 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for LOC100288562 Gene

Localization for LOC100288562 Gene

No data available for Gene Ontology (GO) - Cellular Components for LOC100288562 Gene

Pathways for LOC100288562 Gene

genes like me logo Genes that share pathways with LOC100288562: view

Pathways by source for LOC100288562 Gene

1 KEGG pathway for LOC100288562 Gene

Interacting Proteins for LOC100288562 Gene

Gene Ontology (GO) - Biological Process for LOC100288562 Gene

None

Transcripts for LOC100288562 Gene

mRNA/cDNA for LOC100288562 Gene

(1) REFSEQ mRNAs :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100288562 Gene

No ASD Table

Relevant External Links for LOC100288562 Gene

GeneLoc Exon Structure for
LOC100288562

Expression for LOC100288562 Gene

No Expression Related Data Available

Orthologs for LOC100288562 Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for LOC100288562 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia LOC748922 36
  • 97.47 (n)
  • 94.94 (a)
Species with no ortholog for LOC100288562:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for LOC100288562 Gene

ENSEMBL:
Gene Tree for LOC100288562 (if available)
TreeFam:
Gene Tree for LOC100288562 (if available)

Paralogs for LOC100288562 Gene

Paralogs for LOC100288562 Gene

genes like me logo Genes that share paralogs with LOC100288562: view

Variants for LOC100288562 Gene

Sequence variations from dbSNP and Humsavar for LOC100288562 Gene

SNP ID Clin Chr 08 pos Sequence Context AA Info Type MAF
rs4092923 -- 85,793,043(+) CATCC(A/T)CTGAA upstream-variant-2KB
rs7386441 -- 85,793,239(+) agatg(A/T)ggaag upstream-variant-2KB
rs56136133 -- 85,789,897(+) CCCTG(A/T)GGTGC downstream-variant-500B
rs62511132 -- 85,790,001(+) GGCTA(G/T)TGGTG downstream-variant-500B
rs75809365 -- 85,793,720(+) ATTCA(A/C)CTTAC upstream-variant-2KB

Relevant External Links for LOC100288562 Gene

HapMap Linkage Disequilibrium report
LOC100288562

No data available for Structural Variations from Database of Genomic Variants (DGV) for LOC100288562 Gene

Disorders for LOC100288562 Gene

No disorders were found for LOC100288562 Gene.

No data available for UniProtKB/Swiss-Prot for LOC100288562 Gene

Publications for LOC100288562 Gene

No publications were found for LOC100288562 Gene.

Products for LOC100288562 Gene

  • QIAGEN qRT-PCR Assays for microRNAs that regulate LOC100288562
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for LOC100288562
    • Block miRNA regulation of LOC100288562 using miScript Target Protectors

    Sources for LOC100288562 Gene

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