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Aliases for LOC100288123 Gene

Subcategory (RNA class) for LOC100288123 Gene

antisense

Quality Score for this RNA gene is

2

Aliases for LOC100288123 Gene

  • Uncharacterized LOC100288123 3
  • CTB-31O20.4 5

External Ids for LOC100288123 Gene

ORGUL Members for LOC100288123 Gene

Previous GeneCards Identifiers for LOC100288123 Gene

  • GC00U925520

Summaries for LOC100288123 Gene

GeneCards Summary for LOC100288123 Gene

LOC100288123 (Uncharacterized LOC100288123) is an RNA Gene, and is affiliated with the antisense RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC100288123 Gene

Genomics for LOC100288123 Gene

Regulatory Elements for LOC100288123 Gene

Enhancers for LOC100288123 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH19G001382 1.5 ENCODE dbSUPER 51.1 -438.1 -438064 2.2 CREB3L1 MLX AGO1 DMAP1 FEZF1 YY1 SLC30A9 ZNF143 ZNF263 SP3 CIRBP SF3A2 TMEM259 LOC100288123 ENSG00000261526 ENSG00000267317 GRIN3B WDR18 PLK5 ENSG00000267283
GH19G001406 2 FANTOM5 Ensembl ENCODE dbSUPER 35.3 -409.3 -409260 13.5 MLX CREB3L1 AGO1 FEZF1 DMAP1 YY1 ZNF143 ZNF263 SP3 NFYC SF3A2 TMEM259 LOC100288123 ENSG00000267317 RPS15 CIRBP GRIN3B TCF3 POLRMT MED16
GH19G001019 1.5 ENCODE dbSUPER 44.8 -800.9 -800882 4.4 MLX CREB3L1 AGO1 ZFP64 DMAP1 YY1 SLC30A9 ZNF416 ZNF143 ZNF263 TMEM259 LOC100288123 GRIN3B ABCA7 ENSG00000267317 ENSG00000261526 CIRBP WDR18 MIER2 PLK5
GH19G001236 1.9 FANTOM5 ENCODE dbSUPER 35.1 -565.2 -565231 41.1 CREB3L1 MLX AGO1 ZFP64 DMAP1 FEZF1 YY1 SLC30A9 ZNF416 ZNF143 SF3A2 TMEM259 C19orf24 LOC100288123 CIRBP MIER2 MIDN ENSG00000267317 MUM1 RPS15
GH19G002268 1.7 Ensembl ENCODE dbSUPER 32 +450.1 450126 7.4 CREB3L1 AGO1 DMAP1 FEZF1 YY1 SLC30A9 ZNF143 ZNF263 SP3 NFYC SF3A2 ZNF77 LOC100288123 ENSG00000267139 ENSG00000267317 LINGO3 MIR1227 RPS15 JSRP1 C19orf35
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around LOC100288123 on UCSC Golden Path with GeneCards custom track

Genomic Location for LOC100288123 Gene

Chromosome:
19
Start:
1,822,089 bp from pter
End:
1,824,543 bp from pter
Size:
2,455 bases
Orientation:
Plus strand

Genomic View for LOC100288123 Gene

Genes around LOC100288123 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC100288123 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100288123 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC100288123 Gene

Proteins for LOC100288123 Gene

Post-translational modifications for LOC100288123 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC100288123 Gene

Domains & Families for LOC100288123 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC100288123 Gene

Function for LOC100288123 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100288123 Gene

Localization for LOC100288123 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for LOC100288123 Gene

Pathways & Interactions for LOC100288123 Gene

SuperPathways for LOC100288123 Gene

No Data Available

Interacting Proteins for LOC100288123 Gene

Gene Ontology (GO) - Biological Process for LOC100288123 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC100288123 Gene

Drugs & Compounds for LOC100288123 Gene

No Compound Related Data Available

Transcripts for LOC100288123 Gene

mRNA/cDNA for LOC100288123 Gene

(3) Additional mRNA sequences :
(4) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for LOC100288123 Gene

Uncharacterized LOC100288123:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100288123 Gene

No ASD Table

Relevant External Links for LOC100288123 Gene

GeneLoc Exon Structure for
LOC100288123

Expression for LOC100288123 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC100288123 Gene

mRNA differential expression in normal tissues according to GTEx for LOC100288123 Gene

This gene is overexpressed in Testis (x4.3).

SOURCE GeneReport for Unigene cluster for LOC100288123 Gene:

Hs.662426
genes like me logo Genes that share expression patterns with LOC100288123: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100288123 Gene

Orthologs for LOC100288123 Gene

Evolution for LOC100288123 Gene

ENSEMBL:
Gene Tree for LOC100288123 (if available)
TreeFam:
Gene Tree for LOC100288123 (if available)

No data available for Orthologs for LOC100288123 Gene

Paralogs for LOC100288123 Gene

No data available for Paralogs for LOC100288123 Gene

Variants for LOC100288123 Gene

Sequence variations from dbSNP and Humsavar for LOC100288123 Gene

SNP ID Clin Chr 19 pos Sequence Context AA Info Type
rs1000609783 -- 1,820,176(+) ACAGC(C/T)GCGGC intron-variant, nc-transcript-variant, upstream-variant-2KB, splice-acceptor-variant
rs1001200123 -- 1,821,108(+) TTTGG(A/G)AGGCC intron-variant, upstream-variant-2KB
rs1001232879 -- 1,824,941(+) CCACC(A/G)CGCCC intron-variant, downstream-variant-500B
rs1002214475 -- 1,820,177(+) CAGCT(A/G)CGGCT intron-variant, nc-transcript-variant, upstream-variant-2KB
rs1002474917 -- 1,824,213(+) GTCTG(C/T)ACAGG intron-variant, nc-transcript-variant

Structural Variations from Database of Genomic Variants (DGV) for LOC100288123 Gene

Variant ID Type Subtype PubMed ID
esv32942 CNV gain+loss 17666407
esv3893156 CNV loss 25118596
nsv1160560 CNV deletion 26073780
nsv470107 CNV loss 18288195
nsv578337 CNV gain 21841781
nsv953942 CNV deletion 24416366

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Relevant External Links for LOC100288123 Gene

Disorders for LOC100288123 Gene

Relevant External Links for LOC100288123

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
LOC100288123

No disorders were found for LOC100288123 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC100288123 Gene

Publications for LOC100288123 Gene

No publications were found for LOC100288123 Gene.

Products for LOC100288123 Gene

Sources for LOC100288123 Gene

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