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Aliases for LOC100288123 Gene

Subcategory (RNA class) for LOC100288123 Gene

antisense

Quality Score for this RNA gene is

2

Aliases for LOC100288123 Gene

  • Uncharacterized LOC100288123 3
  • AC012615.6 5

External Ids for LOC100288123 Gene

ORGUL Members for LOC100288123 Gene

Previous GeneCards Identifiers for LOC100288123 Gene

  • GC00U925520

Summaries for LOC100288123 Gene

GeneCards Summary for LOC100288123 Gene

LOC100288123 (Uncharacterized LOC100288123) is an RNA Gene, and is affiliated with the antisense RNA class.

Additional gene information for LOC100288123 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC100288123 Gene

Genomics for LOC100288123 Gene

Regulatory Elements for LOC100288123 Gene

Enhancers for LOC100288123 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH19H001236 1.9 FANTOM5 ENCODE dbSUPER 73.8 -565.2 -565231 41 MLX ZFP64 DMAP1 YY1 SLC30A9 ZNF416 ZNF143 SP3 NFYC ZC3H11A SF3A2 TCF3 LOC100288123 MIER2 CIRBP TMEM259 DAZAP1 PTBP1 C19orf24 MUM1
GH19H001202 1.7 Ensembl ENCODE dbSUPER 66.3 -615.3 -615333 7 ZFP64 FEZF1 YY1 SLC30A9 ZNF143 SP3 ZC3H11A NFYC MEF2D ZNF610 CIRBP TMEM259 DAZAP1 LOC100288123 TCF3 PTBP1 GRIN3B POLRMT MIER2 DOT1L
GH19H001382 1.5 ENCODE dbSUPER 75.1 -438.1 -438064 2 MLX FEZF1 DMAP1 YY1 SLC30A9 ZNF143 SP3 NFYC ZC3H11A ZFP41 SF3A2 CIRBP TMEM259 DAZAP1 MUM1 TCF3 LOC100288123 GRIN3B PTBP1 SPPL2B
GH19H001019 1.5 ENCODE dbSUPER 72.1 -800.9 -800882 4 MLX ZFP64 DMAP1 YY1 SLC30A9 ZNF416 ZNF143 SP3 ZC3H11A MEF2D DAZAP1 TMEM259 LOC100288123 TCF3 GRIN3B MIER2 PTBP1 MED16 CIRBP ENSG00000267317
GH19H001164 2 FANTOM5 Ensembl ENCODE dbSUPER 46.8 -652.4 -652434 10 HDGF PKNOX1 ARNT ARID4B SIN3A ZNF2 YY1 ZNF207 FOS SP3 DAZAP1 LOC100288123 TMEM259 PTBP1 TCF3 MED16 ENSG00000267317 MIER2 CIRBP DOT1L
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around LOC100288123 on UCSC Golden Path with GeneCards custom track

Genomic Location for LOC100288123 Gene

Chromosome:
19
Start:
1,822,089 bp from pter
End:
1,824,543 bp from pter
Size:
2,455 bases
Orientation:
Plus strand

Genomic View for LOC100288123 Gene

Genes around LOC100288123 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC100288123 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100288123 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC100288123 Gene

Proteins for LOC100288123 Gene

Post-translational modifications for LOC100288123 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC100288123 Gene

Domains & Families for LOC100288123 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC100288123 Gene

Function for LOC100288123 Gene

Phenotypes From GWAS Catalog for LOC100288123 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100288123 Gene

Localization for LOC100288123 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100288123 Gene

Pathways & Interactions for LOC100288123 Gene

SuperPathways for LOC100288123 Gene

No Data Available

Interacting Proteins for LOC100288123 Gene

Gene Ontology (GO) - Biological Process for LOC100288123 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC100288123 Gene

Drugs & Compounds for LOC100288123 Gene

No Compound Related Data Available

Transcripts for LOC100288123 Gene

mRNA/cDNA for LOC100288123 Gene

(3) Additional mRNA sequences :
(4) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for LOC100288123 Gene

Uncharacterized LOC100288123:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100288123 Gene

No ASD Table

Relevant External Links for LOC100288123 Gene

GeneLoc Exon Structure for
LOC100288123

Expression for LOC100288123 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC100288123 Gene

mRNA differential expression in normal tissues according to GTEx for LOC100288123 Gene

This gene is overexpressed in Testis (x4.3).

SOURCE GeneReport for Unigene cluster for LOC100288123 Gene:

Hs.662426
genes like me logo Genes that share expression patterns with LOC100288123: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100288123 Gene

Orthologs for LOC100288123 Gene

Evolution for LOC100288123 Gene

ENSEMBL:
Gene Tree for LOC100288123 (if available)
TreeFam:
Gene Tree for LOC100288123 (if available)

No data available for Orthologs for LOC100288123 Gene

Paralogs for LOC100288123 Gene

No data available for Paralogs for LOC100288123 Gene

Variants for LOC100288123 Gene

Sequence variations from dbSNP and Humsavar for LOC100288123 Gene

SNP ID Clin Chr 19 pos Sequence Context AA Info Type
rs1000609783 -- 1,820,176(+) ACAGC(C/T)GCGGC intron-variant, nc-transcript-variant, upstream-variant-2KB, splice-acceptor-variant
rs1001200123 -- 1,821,108(+) TTTGG(A/G)AGGCC intron-variant, upstream-variant-2KB
rs1001232879 -- 1,824,941(+) CCACC(A/G)CGCCC intron-variant, downstream-variant-500B
rs1002214475 -- 1,820,177(+) CAGCT(A/G)CGGCT intron-variant, nc-transcript-variant, upstream-variant-2KB
rs1002474917 -- 1,824,213(+) GTCTG(C/T)ACAGG intron-variant, nc-transcript-variant

Structural Variations from Database of Genomic Variants (DGV) for LOC100288123 Gene

Variant ID Type Subtype PubMed ID
esv32942 CNV gain+loss 17666407
esv3893156 CNV loss 25118596
nsv1160560 CNV deletion 26073780
nsv470107 CNV loss 18288195
nsv578337 CNV gain 21841781
nsv953942 CNV deletion 24416366

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Relevant External Links for LOC100288123 Gene

Disorders for LOC100288123 Gene

Relevant External Links for LOC100288123

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
LOC100288123

No disorders were found for LOC100288123 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC100288123 Gene

Publications for LOC100288123 Gene

No publications were found for LOC100288123 Gene.

Products for LOC100288123 Gene

Sources for LOC100288123 Gene

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