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Aliases for LOC100287049 Gene

Subcategory (RNA class) for LOC100287049 Gene

ncRNA

Quality Score for this RNA gene is

2

Aliases for LOC100287049 Gene

  • Uncharacterized LOC100287049 3
  • AL139011.1 5

External Ids for LOC100287049 Gene

Previous GeneCards Identifiers for LOC100287049 Gene

  • GC00U927809
  • GC01U904918

Summaries for LOC100287049 Gene

GeneCards Summary for LOC100287049 Gene

LOC100287049 (Uncharacterized LOC100287049) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC100287049 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC100287049 Gene

Genomics for LOC100287049 Gene

Regulatory Elements for LOC100287049 Gene

Enhancers for LOC100287049 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH01H161011 1.8 FANTOM5 ENCODE dbSUPER 52.2 +755.5 755470 11 MLX ZFP64 FEZF1 DMAP1 YY1 SLC30A9 ZNF143 SP3 ZC3H11A NFYC DUSP12 USP21 LOC100287049 DEDD TSTD1 LOC148430 PPOX ARHGAP30 KLHDC9 B4GALT3
GH01H161096 1.2 ENCODE 78.1 +835.9 835935 2 HDGF PKNOX1 ARNT ARID4B SIN3A YBX1 FEZF1 ZNF2 YY1 ZNF302 USP21 DUSP12 PPOX LOC100287049 DEDD RPSAP18 LOC148430 DCAF8 NCSTN COPA
GH01H161130 1.2 ENCODE 67.5 +870.6 870637 3 HDGF PKNOX1 ARNT ARID4B SIN3A FEZF1 DMAP1 YBX1 ZNF2 YY1 USP21 DUSP12 LOC100287049 DEDD PPOX B4GALT3 NCSTN ATF6 DCAF8 COPA
GH01H160187 1.5 Ensembl ENCODE dbSUPER 31.1 -71.0 -70967 6 HDGF ATF1 ARNT ZNF133 ARID4B DMAP1 GLI4 ZNF2 GLIS2 ZNF143 USP21 LOC100287049 PPOX LOC729867 NCSTN CASQ1 SNHG28 RPSAP18 SLAMF8 B4GALT3
GH01H159881 1.8 FANTOM5 Ensembl ENCODE dbSUPER 22.6 -379.6 -379609 1 PKNOX1 ATF7 FOS DEK ZNF491 ZNF518A ZNF592 MAFF SMARCA4 GLIS1 RPSAP18 ENSG00000272668 SNHG28 LOC100287049 COPA SLAMF8 PIGM DCAF8 CADM3 CADM3-AS1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around LOC100287049 on UCSC Golden Path with GeneCards custom track

Promoters for LOC100287049 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000014527 456 2001 HDGF FOXA2 MLX ARID4B SIN3A FEZF1 DMAP1 ZNF2 YY1 SLC30A9

Genomic Location for LOC100287049 Gene

Chromosome:
1
Start:
160,261,744 bp from pter
End:
160,262,778 bp from pter
Size:
1,035 bases
Orientation:
Plus strand

Genomic View for LOC100287049 Gene

Genes around LOC100287049 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC100287049 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100287049 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for LOC100287049 Gene

Proteins for LOC100287049 Gene

Post-translational modifications for LOC100287049 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC100287049 Gene

Domains & Families for LOC100287049 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC100287049 Gene

Function for LOC100287049 Gene

Phenotypes From GWAS Catalog for LOC100287049 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100287049 Gene

Localization for LOC100287049 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100287049 Gene

Pathways & Interactions for LOC100287049 Gene

SuperPathways for LOC100287049 Gene

No Data Available

Interacting Proteins for LOC100287049 Gene

Gene Ontology (GO) - Biological Process for LOC100287049 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC100287049 Gene

Drugs & Compounds for LOC100287049 Gene

No Compound Related Data Available

Transcripts for LOC100287049 Gene

mRNA/cDNA for LOC100287049 Gene

(3) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for LOC100287049 Gene

Uncharacterized LOC100287049:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100287049 Gene

No ASD Table

Relevant External Links for LOC100287049 Gene

GeneLoc Exon Structure for
LOC100287049

Expression for LOC100287049 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC100287049 Gene

mRNA expression in normal human tissues for LOC100287049 Gene

SOURCE GeneReport for Unigene cluster for LOC100287049 Gene:

Hs.657648
genes like me logo Genes that share expression patterns with LOC100287049: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100287049 Gene

Orthologs for LOC100287049 Gene

Evolution for LOC100287049 Gene

ENSEMBL:
Gene Tree for LOC100287049 (if available)
TreeFam:
Gene Tree for LOC100287049 (if available)

No data available for Orthologs for LOC100287049 Gene

Paralogs for LOC100287049 Gene

No data available for Paralogs for LOC100287049 Gene

Variants for LOC100287049 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Relevant External Links for LOC100287049 Gene

Disorders for LOC100287049 Gene

Relevant External Links for LOC100287049

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
LOC100287049

No disorders were found for LOC100287049 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC100287049 Gene

Publications for LOC100287049 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 60

Products for LOC100287049 Gene

Sources for LOC100287049 Gene

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