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Aliases for LOC100268168 Gene

Subcategory (RNA class) for LOC100268168 Gene

ncRNA

Quality Score for this RNA gene is

2

Aliases for LOC100268168 Gene

  • Uncharacterized LOC100268168 3
  • CTC-308K20.1 3
  • AC008429.1 5

External Ids for LOC100268168 Gene

Previous GeneCards Identifiers for LOC100268168 Gene

  • GC05U901103
  • GC05M172381

Summaries for LOC100268168 Gene

GeneCards Summary for LOC100268168 Gene

LOC100268168 (Uncharacterized LOC100268168) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC100268168 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC100268168 Gene

Genomics for LOC100268168 Gene

Regulatory Elements for LOC100268168 Gene

Enhancers for LOC100268168 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH05H172763 2.4 VISTA FANTOM5 ENCODE dbSUPER 11.8 +187.2 187193 16.8 MLX ZFP64 FEZF1 DMAP1 YY1 SLC30A9 ZNF143 SP3 NFYC ZC3H11A DUSP1 CREBRF KLF3P1 ERGIC1 ENSG00000253628 ENSG00000253172 SMIM23 BOD1 EFCAB9 LOC100268168
GH05H172894 2 FANTOM5 Ensembl ENCODE dbSUPER 11.1 +58.4 58445 12.7 HDGF PKNOX1 FOXA2 MLX ARNT ARID4B SIN3A FEZF1 ZNF2 ZBTB7B KLF3P1 BOD1 BNIP1 SH3PXD2B UBTD2 ERGIC1 DUSP1 ENSG00000253628 ENSG00000253172 CREBRF
GH05H172877 2 FANTOM5 Ensembl ENCODE dbSUPER 10.3 +78.6 78627 6.5 HDGF PKNOX1 ATF1 ZNF766 ELK1 ZNF143 ZNF207 FOS ATF7 RUNX3 DUSP1 ERGIC1 RPL26L1 ENSG00000254295 LOC100268168 BNIP1 CREBRF
GH05H172731 1.9 FANTOM5 Ensembl ENCODE dbSUPER 10.8 +225.1 225106 6.4 PKNOX1 FOXA2 MLX ARID4B SIN3A YY1 SLC30A9 FOS SP5 MXD4 BOD1 LOC101928093 LOC105377730 LOC401218 DUSP1 LOC100268168 ENSG00000254295 RPL26L1 SH3PXD2B ATP6V0E1
GH05H172713 1.8 FANTOM5 Ensembl ENCODE dbSUPER 11.4 +243.9 243865 5 PKNOX1 FOXA2 MLX ZFP64 ARID4B SIN3A ZNF2 YY1 SLC30A9 ZNF143 DUSP1 LOC105377730 LOC401218 LOC100268168 ENSG00000254295 RPL26L1 UBTD2 ENSG00000253445 LOC101928093
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around LOC100268168 on UCSC Golden Path with GeneCards custom track

Promoters for LOC100268168 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000190868 292 1801 HDGF ARNT ARID4B SIN3A DMAP1 ZNF2 ZBTB7B YY1 ZNF766 CBX5

Genomic Locations for LOC100268168 Gene

Genomic Locations for LOC100268168 Gene
chr5:172,954,782-172,959,392
(GRCh38/hg38)
Size:
4,611 bases
Orientation:
Minus strand
chr5:172,381,785-172,386,395
(GRCh37/hg19)

Genomic View for LOC100268168 Gene

Genes around LOC100268168 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC100268168 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100268168 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC100268168 Gene

Proteins for LOC100268168 Gene

Post-translational modifications for LOC100268168 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC100268168 Gene

Domains & Families for LOC100268168 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC100268168 Gene

Function for LOC100268168 Gene

Phenotypes From GWAS Catalog for LOC100268168 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100268168 Gene

Localization for LOC100268168 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100268168 Gene

Pathways & Interactions for LOC100268168 Gene

SuperPathways for LOC100268168 Gene

No Data Available

Interacting Proteins for LOC100268168 Gene

Gene Ontology (GO) - Biological Process for LOC100268168 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC100268168 Gene

Drugs & Compounds for LOC100268168 Gene

No Compound Related Data Available

Transcripts for LOC100268168 Gene

mRNA/cDNA for LOC100268168 Gene

(2) Additional mRNA sequences :
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for LOC100268168 Gene

Uncharacterized LOC100268168:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100268168 Gene

No ASD Table

Relevant External Links for LOC100268168 Gene

GeneLoc Exon Structure for
LOC100268168

Expression for LOC100268168 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC100268168 Gene

mRNA differential expression in normal tissues according to GTEx for LOC100268168 Gene

This gene is overexpressed in Testis (x4.7).

SOURCE GeneReport for Unigene cluster for LOC100268168 Gene:

Hs.519766
genes like me logo Genes that share expression patterns with LOC100268168: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100268168 Gene

Orthologs for LOC100268168 Gene

Evolution for LOC100268168 Gene

ENSEMBL:
Gene Tree for LOC100268168 (if available)
TreeFam:
Gene Tree for LOC100268168 (if available)

No data available for Orthologs for LOC100268168 Gene

Paralogs for LOC100268168 Gene

No data available for Paralogs for LOC100268168 Gene

Variants for LOC100268168 Gene

Sequence variations from dbSNP and Humsavar for LOC100268168 Gene

SNP ID Clin Chr 05 pos Sequence Context AA Info Type
rs1000107937 -- 172,956,193(+) TCACC(C/T)GTAAT intron-variant
rs1000285579 -- 172,961,083(+) ACTCA(A/G)TTAAG intron-variant, upstream-variant-2KB
rs1000986372 -- 172,958,852(+) CGGGG(G/T)CTAGG intron-variant, upstream-variant-2KB
rs1001248464 -- 172,955,997(+) GGTGC(A/T)TTTTT intron-variant, nc-transcript-variant
rs1001341317 -- 172,956,941(+) TCGAA(A/G)AAAAA intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for LOC100268168 Gene

Variant ID Type Subtype PubMed ID
nsv830555 CNV loss 17160897

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Relevant External Links for LOC100268168 Gene

Disorders for LOC100268168 Gene

Relevant External Links for LOC100268168

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
LOC100268168

No disorders were found for LOC100268168 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC100268168 Gene

Publications for LOC100268168 Gene

No publications were found for LOC100268168 Gene.

Products for LOC100268168 Gene

Sources for LOC100268168 Gene

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