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Aliases for LOC100192426 Gene

Subcategory (RNA class) for LOC100192426 Gene

ncRNA

Quality Score for this RNA gene is

2

Aliases for LOC100192426 Gene

  • Uncharacterized LOC100192426 3
  • AP001094.3 5

External Ids for LOC100192426 Gene

Summaries for LOC100192426 Gene

GeneCards Summary for LOC100192426 Gene

LOC100192426 (Uncharacterized LOC100192426) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC100192426 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC100192426 Gene

Genomics for LOC100192426 Gene

Regulatory Elements for LOC100192426 Gene

Enhancers for LOC100192426 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH18H008367 0.8 ENCODE 0.7 -0.6 -555 0 CTCF RB1 ETV1 MAX ZIC2 RAD21 GLIS2 ZNF366 PATZ1 SCRT2 LOC100192426 ENSG00000265413
GH18H008340 1.2 Ensembl ENCODE 0.3 +25.1 25116 2 FOXA2 ARID4B SIN3A DMAP1 DNMT3B THRB RAD21 RARA YY1 HSF1 LOC100192426 GC18M007966
GH18H008366 0.4 ENCODE 0.7 +0.1 77 0 EZH2 LOC100192426 GC18M007966
GH18H008389 0.6 ENCODE 0.3 -22.8 -22784 0 CTCF ZNF654 RB1 TEAD1 REST RAD21 ZNF143 SMC3 TCF7L2 ENSG00000265413 LOC100192426
GH18H008329 0.6 ENCODE 0.3 +37.6 37647 0 JUN NR2F1 CREB1 FOS ATF7 RARA LOC100192426 GC18M007966
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around LOC100192426 on UCSC Golden Path with GeneCards custom track

Promoters for LOC100192426 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000100374 -566 401 CTCF RB1 ETV1 MAX ZIC2 RAD21 GLIS2 ZNF366 PATZ1 SCRT2

Genomic Location for LOC100192426 Gene

Chromosome:
18
Start:
8,360,820 bp from pter
End:
8,367,034 bp from pter
Size:
6,215 bases
Orientation:
Minus strand

Genomic View for LOC100192426 Gene

Genes around LOC100192426 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC100192426 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100192426 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC100192426 Gene

Proteins for LOC100192426 Gene

Post-translational modifications for LOC100192426 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC100192426 Gene

Domains & Families for LOC100192426 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC100192426 Gene

Function for LOC100192426 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100192426 Gene

Localization for LOC100192426 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100192426 Gene

Pathways & Interactions for LOC100192426 Gene

SuperPathways for LOC100192426 Gene

No Data Available

Interacting Proteins for LOC100192426 Gene

Gene Ontology (GO) - Biological Process for LOC100192426 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC100192426 Gene

Drugs & Compounds for LOC100192426 Gene

No Compound Related Data Available

Transcripts for LOC100192426 Gene

mRNA/cDNA for LOC100192426 Gene

(1) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for LOC100192426 Gene

Uncharacterized LOC100192426:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100192426 Gene

No ASD Table

Relevant External Links for LOC100192426 Gene

GeneLoc Exon Structure for
LOC100192426

Expression for LOC100192426 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC100192426 Gene

SOURCE GeneReport for Unigene cluster for LOC100192426 Gene:

Hs.666655
genes like me logo Genes that share expression patterns with LOC100192426: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100192426 Gene

Orthologs for LOC100192426 Gene

Evolution for LOC100192426 Gene

ENSEMBL:
Gene Tree for LOC100192426 (if available)
TreeFam:
Gene Tree for LOC100192426 (if available)

No data available for Orthologs for LOC100192426 Gene

Paralogs for LOC100192426 Gene

No data available for Paralogs for LOC100192426 Gene

Variants for LOC100192426 Gene

Sequence variations from dbSNP and Humsavar for LOC100192426 Gene

SNP ID Clin Chr 18 pos Sequence Context AA Info Type
rs1000487331 -- 8,363,647(+) CATTT(C/G)GGGAA intron-variant
rs1000523503 -- 8,368,719(+) TCTCA(G/T)CTCAG intron-variant, upstream-variant-2KB
rs1000700782 -- 8,363,288(+) TTAGG(A/T)GTTGG intron-variant
rs1001042482 -- 8,363,404(+) ACACA(C/T)GTGAA intron-variant
rs1001361075 -- 8,365,767(+) TCCGG(A/G)ACACC intron-variant, nc-transcript-variant

Structural Variations from Database of Genomic Variants (DGV) for LOC100192426 Gene

Variant ID Type Subtype PubMed ID
nsv1058445 CNV loss 25217958
nsv526300 CNV loss 19592680
nsv576426 CNV gain 21841781

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Relevant External Links for LOC100192426 Gene

Disorders for LOC100192426 Gene

Relevant External Links for LOC100192426

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
LOC100192426

No disorders were found for LOC100192426 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC100192426 Gene

Publications for LOC100192426 Gene

  1. The sequence of the human genome. (PMID: 11181995) Venter JC … Zhu X (Science (New York, N.Y.) 2001) 3 60

Products for LOC100192426 Gene

Sources for LOC100192426 Gene

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