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Aliases for LOC100134368 Gene

Subcategory (RNA class) for LOC100134368 Gene

ncRNA

Quality Score for this RNA gene is

2

Aliases for LOC100134368 Gene

  • Uncharacterized LOC100134368 3
  • Z97634.1 5

External Ids for LOC100134368 Gene

Previous GeneCards Identifiers for LOC100134368 Gene

  • GC16U900804
  • GC16P000433
  • GC16P000351
  • GC16P000434
  • GC16P000435
  • GC16P000440
  • GC16P000443
  • GC16P000445
  • GC16P000449
  • GC16P000452
  • GC16P000385
  • GC16P000397

Summaries for LOC100134368 Gene

GeneCards Summary for LOC100134368 Gene

LOC100134368 (Uncharacterized LOC100134368) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC100134368 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC100134368 Gene

Genomics for LOC100134368 Gene

Regulatory Elements for LOC100134368 Gene

Enhancers for LOC100134368 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH16H001308 1.4 ENCODE dbSUPER 11.1 +928.7 928658 5.2 FEZF1 DMAP1 YY1 SLC30A9 ZNF416 ZNF143 ZNF548 SP3 MCM3 NFYC WDR90 CRAMP1 ENSG00000261505 TELO2 UBE2I E4F1 TSC2 ENSG00000260051 JMJD8 RHOT2
GH16H000981 1.2 ENCODE dbSUPER 11.1 +599.4 599379 0.2 ZNF493 ZNF133 GLI4 ZNF2 GLIS2 ZNF416 KLF7 ZNF548 SP3 MCM3 WDR90 CRAMP1 ENSG00000261505 UBE2I JMJD8 TELO2 ENSG00000260954 UNKL ENSG00000260051 WDR24
GH16H000986 1.2 ENCODE dbSUPER 11.1 +599.0 599049 0 ZNF473 ZNF493 ZSCAN4 ZNF133 GLI4 ZNF2 EGR1 ZNF366 SCRT2 ZNF416 ENSG00000261505 CRAMP1 WDR90 UBE2I TBL3 ENSG00000260051 ENSG00000260954 ENSG00000255513 SNORA64 UNKL
GH16H000386 1.4 Ensembl ENCODE dbSUPER 8.3 +5.9 5867 3.6 HDAC1 PKNOX1 ATF1 ZBTB40 TCF12 EGR1 ATF7 ZNF362 ZEB2 REST PIGQ NHLRC4 PRR35 NME4 TMEM8A LOC100134368 RPUSD1 GC16P000448
GH16H001271 1.1 ENCODE 9.8 +889.7 889730 1.6 PKNOX1 SIN3A FEZF1 ZNF2 ZNF302 ZNF416 SP3 REST ZNF662 ZNF592 CRAMP1 WDR90 TELO2 IFT140 ENSG00000261505 TSC2 E4F1 WDR24 ENSG00000260646 UBE2I
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around LOC100134368 on UCSC Golden Path with GeneCards custom track

Promoters for LOC100134368 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000082169 -97 2401 PKNOX1 ZFP64 ARID4B SIN3A DMAP1 ETS1 SLC30A9 GLIS2 ELK1 SP3

Transcription factor binding sites by QIAGEN in the LOC100134368 gene promoter:

Genomic Locations for LOC100134368 Gene

Genomic Locations for LOC100134368 Gene
chr16:382,097-392,960
(GRCh38/hg38)
Size:
10,864 bases
Orientation:
Plus strand
chr16:432,097-442,960
(GRCh37/hg19)

Genomic View for LOC100134368 Gene

Genes around LOC100134368 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC100134368 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100134368 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC100134368 Gene

Proteins for LOC100134368 Gene

Post-translational modifications for LOC100134368 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC100134368 Gene

Domains & Families for LOC100134368 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC100134368 Gene

Function for LOC100134368 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100134368 Gene

Localization for LOC100134368 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100134368 Gene

Pathways & Interactions for LOC100134368 Gene

SuperPathways for LOC100134368 Gene

No Data Available

Interacting Proteins for LOC100134368 Gene

Gene Ontology (GO) - Biological Process for LOC100134368 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC100134368 Gene

Drugs & Compounds for LOC100134368 Gene

No Compound Related Data Available

Transcripts for LOC100134368 Gene

mRNA/cDNA for LOC100134368 Gene

(2) Additional mRNA sequences :
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for LOC100134368 Gene

Uncharacterized LOC100134368:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100134368 Gene

No ASD Table

Relevant External Links for LOC100134368 Gene

GeneLoc Exon Structure for
LOC100134368

Expression for LOC100134368 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC100134368 Gene

SOURCE GeneReport for Unigene cluster for LOC100134368 Gene:

Hs.621241
genes like me logo Genes that share expression patterns with LOC100134368: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100134368 Gene

Orthologs for LOC100134368 Gene

Evolution for LOC100134368 Gene

ENSEMBL:
Gene Tree for LOC100134368 (if available)
TreeFam:
Gene Tree for LOC100134368 (if available)

No data available for Orthologs for LOC100134368 Gene

Paralogs for LOC100134368 Gene

No data available for Paralogs for LOC100134368 Gene

Variants for LOC100134368 Gene

Sequence variations from dbSNP and Humsavar for LOC100134368 Gene

SNP ID Clin Chr 16 pos Sequence Context AA Info Type
rs1000029973 -- 380,988(+) TGACG(G/T)TCTCC intron-variant, upstream-variant-2KB
rs1000226676 -- 385,944(+) TGCAA(A/C)TTTTA intron-variant
rs1000334383 -- 390,223(+) TGGAA(A/G)ACGAA intron-variant
rs1000353591 -- 390,877(+) ACCGC(A/G)CTCAG intron-variant
rs1000378942 -- 385,154(+) AGAGC(A/G)AGTCT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for LOC100134368 Gene

Variant ID Type Subtype PubMed ID
nsv977100 CNV duplication 23825009
nsv952897 CNV deletion 24416366
nsv827478 CNV gain 20364138
nsv570956 CNV gain 21841781
nsv570954 CNV loss 21841781
nsv517471 CNV loss 19592680
nsv457303 CNV loss 19166990
esv3637563 CNV gain 21293372
esv33562 CNV loss 17666407
esv2422427 CNV duplication 17116639
dgv4810n54 CNV loss 21841781
dgv4809n54 CNV loss 21841781
dgv32n68 CNV loss 17160897

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Relevant External Links for LOC100134368 Gene

Disorders for LOC100134368 Gene

Relevant External Links for LOC100134368

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
LOC100134368

No disorders were found for LOC100134368 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC100134368 Gene

Publications for LOC100134368 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 60

Products for LOC100134368 Gene

Sources for LOC100134368 Gene

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