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Aliases for LOC100130370 Gene

Aliases for LOC100130370 Gene

  • Uncharacterized LOC100130370 3
  • RP11-1055B8.3 5

External Ids for LOC100130370 Gene

Previous GeneCards Identifiers for LOC100130370 Gene

  • GC17U901001
  • GC17M076969
  • GC17M079352

Summaries for LOC100130370 Gene

GeneCards Summary for LOC100130370 Gene

LOC100130370 (Uncharacterized LOC100130370) is a Protein Coding gene.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC100130370 Gene

Genomics for LOC100130370 Gene

Regulatory Elements for LOC100130370 Gene


Enhancers around LOC100130370 on UCSC Golden Path with GeneCards custom track

Promoters for LOC100130370 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000099395 -403 1201 PKNOX1 ATF1 AGO1 ZNF133 SIN3A YY1 GLIS2 KLF7 KDM4B SP3

Genomic Location for LOC100130370 Gene

Chromosome:
17
Start:
81,375,498 bp from pter
End:
81,386,797 bp from pter
Size:
11,300 bases
Orientation:
Minus strand

Genomic View for LOC100130370 Gene

Genes around LOC100130370 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC100130370 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100130370 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC100130370 Gene

Proteins for LOC100130370 Gene

Post-translational modifications for LOC100130370 Gene

No Post-translational modifications

Other Protein References for LOC100130370 Gene

No data available for DME Specific Peptides for LOC100130370 Gene

Domains & Families for LOC100130370 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC100130370 Gene

Function for LOC100130370 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100130370 Gene

Localization for LOC100130370 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for LOC100130370 Gene

Pathways & Interactions for LOC100130370 Gene

SuperPathways for LOC100130370 Gene

No Data Available

Interacting Proteins for LOC100130370 Gene

Gene Ontology (GO) - Biological Process for LOC100130370 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC100130370 Gene

Drugs & Compounds for LOC100130370 Gene

No Compound Related Data Available

Transcripts for LOC100130370 Gene

mRNA/cDNA for LOC100130370 Gene

(7) REFSEQ mRNAs :
(0) Additional mRNA sequences :
-
(6) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for LOC100130370 Gene

Uncharacterized LOC100130370:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100130370 Gene

No ASD Table

Relevant External Links for LOC100130370 Gene

GeneLoc Exon Structure for
LOC100130370

Expression for LOC100130370 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC100130370 Gene

SOURCE GeneReport for Unigene cluster for LOC100130370 Gene:

Hs.646594
genes like me logo Genes that share expression patterns with LOC100130370: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100130370 Gene

Orthologs for LOC100130370 Gene

Evolution for LOC100130370 Gene

ENSEMBL:
Gene Tree for LOC100130370 (if available)
TreeFam:
Gene Tree for LOC100130370 (if available)

No data available for Orthologs for LOC100130370 Gene

Paralogs for LOC100130370 Gene

No data available for Paralogs for LOC100130370 Gene

Variants for LOC100130370 Gene

Sequence variations from dbSNP and Humsavar for LOC100130370 Gene

SNP ID Clin Chr 17 pos Sequence Context AA Info Type
rs1000315326 -- 81,392,327(+) AGGAG(A/G)AGGGC utr-variant-5-prime
rs1000946864 -- 81,383,861(+) CAGGG(C/G)AAGCT intron-variant, upstream-variant-2KB
rs1001087606 -- 81,388,315(+) CTGAA(A/G)GTAAC utr-variant-5-prime
rs1001219217 -- 81,388,587(+) GCCCC(A/G)AGGGC utr-variant-5-prime
rs1001370393 -- 81,392,767(+) CCCCA(C/G)AGGGC utr-variant-5-prime

Structural Variations from Database of Genomic Variants (DGV) for LOC100130370 Gene

Variant ID Type Subtype PubMed ID
esv26223 CNV gain+loss 19812545
nsv428351 CNV gain 18775914
nsv576173 CNV loss 21841781
nsv576174 CNV loss 21841781
nsv576175 CNV loss 21841781
nsv828128 CNV loss 20364138
nsv952389 CNV deletion 24416366

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Relevant External Links for LOC100130370 Gene

Disorders for LOC100130370 Gene

Relevant External Links for LOC100130370

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
LOC100130370

No disorders were found for LOC100130370 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC100130370 Gene

Publications for LOC100130370 Gene

  1. Normalization and subtraction: two approaches to facilitate gene discovery. (PMID: 8889548) Bonaldo M.F. … Soares M.B. (Genome Res. 1996) 3 64

Products for LOC100130370 Gene

Sources for LOC100130370 Gene

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