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Aliases for LOC100130176 Gene

Subcategory (RNA class) for LOC100130176 Gene

lncRNA

Aliases for LOC100130176 Gene

  • Transmembrane Protein 188 Pseudogene 3
  • AL049610.1 5

External Ids for LOC100130176 Gene

ORGUL Members for LOC100130176 Gene

Previous GeneCards Identifiers for LOC100130176 Gene

  • GC16P048619
  • GC0XM102793
  • GC0XM102907

Summaries for LOC100130176 Gene

GeneCards Summary for LOC100130176 Gene

LOC100130176 (Transmembrane Protein 188 Pseudogene) is a Pseudogene, and is affiliated with the lncRNA class.

Additional gene information for LOC100130176 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC100130176 Gene

Genomics for LOC100130176 Gene

Regulatory Elements for LOC100130176 Gene

Enhancers for LOC100130176 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH0XH103655 1.1 Ensembl ENCODE 0.4 -5.6 -5580 4.2 TBP SOX13 FOXA2 JUN MAX BRCA1 RFX5 ZFHX2 CTBP1 GATA3 MORF4L2-AS1 MORF4L2 TCEAL3 TCEAL1 TCEAL3-AS1 PLP1 BEX4 BEX2 RAB40A LOC100130176
GH0XH103684 1.4 ENCODE dbSUPER 0.3 -34.9 -34916 4.4 PKNOX1 ARNT ARID4B SIN3A ZNF2 ZBTB7B YY1 ZNF207 ZNF143 FOS BEX4 RAB40A MORF4L2-AS1 LOC100130176
GH0XH103656 0.5 ENCODE 0.7 -3.4 -3382 0.2 ZFHX2 ZSCAN5C EGR2 LOC100130176 MORF4L2-AS1
GH0XH103637 0.8 Ensembl ENCODE 0.4 +13.6 13579 2.2 RFX1 RFX3 MYNN FOS ZIC2 TCEAL3 TCEAL4 PLP1 BEX4 BEX2 LOC105373302 LOC100130176
GH0XH103674 0.6 ENCODE 0.3 -22.9 -22885 0.6 MAZ KLF1 POLR2A IKZF1 ZNF600 SUPT5H MORF4L2-AS1 LOC100130176
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around LOC100130176 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC100130176 Gene

Genomic Locations for LOC100130176 Gene
chrX:103,651,733-103,652,106
(GRCh38/hg38)
Size:
374 bases
Orientation:
Minus strand
chrX:102,906,559-102,907,034
(GRCh37/hg19)

Genomic View for LOC100130176 Gene

Genes around LOC100130176 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC100130176 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100130176 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC100130176 Gene

Proteins for LOC100130176 Gene

Post-translational modifications for LOC100130176 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC100130176 Gene

Domains & Families for LOC100130176 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC100130176 Gene

Function for LOC100130176 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100130176 Gene

Localization for LOC100130176 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100130176 Gene

Pathways & Interactions for LOC100130176 Gene

SuperPathways for LOC100130176 Gene

No Data Available

Interacting Proteins for LOC100130176 Gene

Gene Ontology (GO) - Biological Process for LOC100130176 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC100130176 Gene

Drugs & Compounds for LOC100130176 Gene

No Compound Related Data Available

Transcripts for LOC100130176 Gene

mRNA/cDNA for LOC100130176 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100130176 Gene

No ASD Table

Relevant External Links for LOC100130176 Gene

GeneLoc Exon Structure for
LOC100130176

Expression for LOC100130176 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC100130176 Gene

genes like me logo Genes that share expression patterns with LOC100130176: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100130176 Gene

Orthologs for LOC100130176 Gene

Evolution for LOC100130176 Gene

ENSEMBL:
Gene Tree for LOC100130176 (if available)
TreeFam:
Gene Tree for LOC100130176 (if available)

No data available for Orthologs for LOC100130176 Gene

Paralogs for LOC100130176 Gene

No data available for Paralogs for LOC100130176 Gene

Variants for LOC100130176 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Relevant External Links for LOC100130176 Gene

Disorders for LOC100130176 Gene

No disorders were found for LOC100130176 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC100130176 Gene

Publications for LOC100130176 Gene

No publications were found for LOC100130176 Gene.

Products for LOC100130176 Gene

Sources for LOC100130176 Gene

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