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Aliases for LOC100128882 Gene

Subcategory (RNA class) for LOC100128882 Gene

ncRNA

Quality Score for this RNA gene is

2

Aliases for LOC100128882 Gene

  • Uncharacterized LOC100128882 3
  • AC116552.1 5

External Ids for LOC100128882 Gene

Previous GeneCards Identifiers for LOC100128882 Gene

  • GC16U900694
  • GC16M087106

Summaries for LOC100128882 Gene

GeneCards Summary for LOC100128882 Gene

LOC100128882 (Uncharacterized LOC100128882) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC100128882 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC100128882 Gene

Genomics for LOC100128882 Gene

Regulatory Elements for LOC100128882 Gene

Enhancers for LOC100128882 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH16H088529 1.4 Ensembl ENCODE dbSUPER 21.3 -0.4 -432 6 HDAC1 RB1 SIN3A TCF12 ZNF766 GLIS2 GATA2 ELK1 ZNF143 ETV6 LOC100128882 ZC3H18-AS1
GH16H088524 1.5 Ensembl ENCODE dbSUPER 18.1 +5.6 5552 3 HDGF ATF1 ARID4B ZNF121 GLIS2 GATA2 ZNF143 ATF7 REST MIER2 ZC3H18 LOC100128882 ANKRD11 ZFPM1 ENSG00000268218 LINC00304 ZNF469 ENSG00000259877 BANP LOC101927863
GH16H088511 0.8 ENCODE dbSUPER 24.8 +18.8 18843 2 PAF1 RING1 GLIS2 RFX1 RCOR1 BMI1 LOC100128882 ENSG00000259877 CTU2 LOC101927863 SPG7 ENSG00000268218 ANKRD11 MIR5189
GH16H088502 1.9 FANTOM5 Ensembl ENCODE dbSUPER 10.4 +25.1 25110 9 PKNOX1 FOXA2 MLX ZFP64 ARID4B FEZF1 DMAP1 ZNF2 YY1 SLC30A9 ENSG00000259877 LOC101927863 SPG7 ZC3H18 ANKRD11 ENSG00000268218 ENSG00000260121 ACSF3 ENSG00000260279 GALNS
GH16H089382 1.4 Ensembl ENCODE dbSUPER 12.4 -851.3 -851322 1 HDAC1 HDGF TBL1XR1 ARID4B SIN3A RAD21 TCF12 ZNF121 GATA2 ZNF207 ANKRD11 AFG3L1P MC1R ENSG00000259877 ZC3H18 URAHP TCF25 LOC100128882 RNU6-430P CTU2
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around LOC100128882 on UCSC Golden Path with GeneCards custom track

Genomic Location for LOC100128882 Gene

Chromosome:
16
Start:
88,512,836 bp from pter
End:
88,531,995 bp from pter
Size:
19,160 bases
Orientation:
Minus strand

Genomic View for LOC100128882 Gene

Genes around LOC100128882 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC100128882 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100128882 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC100128882 Gene

Proteins for LOC100128882 Gene

Post-translational modifications for LOC100128882 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC100128882 Gene

Domains & Families for LOC100128882 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC100128882 Gene

Function for LOC100128882 Gene

Phenotypes From GWAS Catalog for LOC100128882 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100128882 Gene

Localization for LOC100128882 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100128882 Gene

Pathways & Interactions for LOC100128882 Gene

SuperPathways for LOC100128882 Gene

No Data Available

Interacting Proteins for LOC100128882 Gene

Gene Ontology (GO) - Biological Process for LOC100128882 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC100128882 Gene

Drugs & Compounds for LOC100128882 Gene

No Compound Related Data Available

Transcripts for LOC100128882 Gene

mRNA/cDNA for LOC100128882 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100128882 Gene

No ASD Table

Relevant External Links for LOC100128882 Gene

GeneLoc Exon Structure for
LOC100128882

Expression for LOC100128882 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC100128882 Gene

genes like me logo Genes that share expression patterns with LOC100128882: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100128882 Gene

Orthologs for LOC100128882 Gene

Evolution for LOC100128882 Gene

ENSEMBL:
Gene Tree for LOC100128882 (if available)
TreeFam:
Gene Tree for LOC100128882 (if available)

No data available for Orthologs for LOC100128882 Gene

Paralogs for LOC100128882 Gene

No data available for Paralogs for LOC100128882 Gene

Variants for LOC100128882 Gene

Sequence variations from dbSNP and Humsavar for LOC100128882 Gene

SNP ID Clin Chr 16 pos Sequence Context AA Info Type
rs1000014011 -- 88,518,097(+) CTACT(C/T)GGGAG intron-variant
rs1000251316 -- 88,525,133(+) CAAGA(A/G)GCAGG intron-variant
rs1000266589 -- 88,523,374(+) TGCCC(A/G)GCCAG intron-variant
rs1000292131 -- 88,513,471(+) GCCAG(A/G)GGACC intron-variant, upstream-variant-2KB
rs1000427612 -- 88,521,488(+) GGTAT(C/T)CTGAG intron-variant, downstream-variant-500B

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Relevant External Links for LOC100128882 Gene

Disorders for LOC100128882 Gene

No disorders were found for LOC100128882 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC100128882 Gene

Publications for LOC100128882 Gene

No publications were found for LOC100128882 Gene.

Products for LOC100128882 Gene

Sources for LOC100128882 Gene

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