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Aliases for LOC100128882 Gene

Aliases for LOC100128882 Gene

  • Uncharacterized LOC100128882 3
  • RP11-21B21.4 5

External Ids for LOC100128882 Gene

Previous GeneCards Identifiers for LOC100128882 Gene

  • GC16U900694
  • GC16M087106

Summaries for LOC100128882 Gene

GeneCards Summary for LOC100128882 Gene

LOC100128882 (Uncharacterized LOC100128882) is an Uncategorized gene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC100128882 Gene

Genomics for LOC100128882 Gene

Regulatory Elements for LOC100128882 Gene

Enhancers for LOC100128882 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH16F088511 0.5 ENCODE 24.8 +18.8 18843 2.7 PAF1 RING1 GLIS2 RFX1 LOC100128882 ENSG00000259877 CTU2 LOC101927863 SPG7 ENSG00000268218 MIR5189
GH16F088529 1 Ensembl ENCODE 21.4 -1.0 -1019 7.9 ARID4B SIN3A YY1 ZNF121 GLIS2 GATA2 ELK1 PAF1 SP5 REST LOC100128882 RNF166 ZC3H18-AS1
GH16F088524 0.7 Ensembl ENCODE 18.1 +5.6 5552 4.0 HDGF PKNOX1 ARID4B ZNF48 ZNF121 GLIS2 GATA2 ZNF143 KLF13 ZNF263 LOC100128882 ZFPM1 ZC3H18 ZNF469 SNAI3-AS1 GALNS MIR5189
GH16F088437 0.2 ENCODE 12.5 +94.4 94448 0.2 RING1 CTCF KLF1 ZSCAN9 ZNF2 RAD21 TEAD3 HIC1 PATZ1 ZNF143 ENSG00000259877 LOC100128882 ZC3H18 CTU2 ENSG00000268218 ZCCHC14 ZFPM1 GC16P088248
GH16F088381 0.8 Ensembl ENCODE 12.5 +148.7 148704 3.8 PKNOX1 RAD21 ZNF121 SMARCA5 REST GATAD2B NR2F2 IKZF1 KDM1A ZBTB33 ENSG00000259877 LOC100128882 ZNF469 CTU2 ENSG00000268218 ZCCHC14 ZFPM1 GC16P088248
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around LOC100128882 on UCSC Golden Path with GeneCards custom track

Genomic Location for LOC100128882 Gene

Chromosome:
16
Start:
88,512,836 bp from pter
End:
88,531,995 bp from pter
Size:
19,160 bases
Orientation:
Minus strand

Genomic View for LOC100128882 Gene

Genes around LOC100128882 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC100128882 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100128882 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC100128882 Gene

Proteins for LOC100128882 Gene

Post-translational modifications for LOC100128882 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC100128882 Gene

Domains & Families for LOC100128882 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC100128882 Gene

Function for LOC100128882 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100128882 Gene

Localization for LOC100128882 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for LOC100128882 Gene

Pathways & Interactions for LOC100128882 Gene

SuperPathways for LOC100128882 Gene

No Data Available

Interacting Proteins for LOC100128882 Gene

Gene Ontology (GO) - Biological Process for LOC100128882 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC100128882 Gene

Transcripts for LOC100128882 Gene

mRNA/cDNA for LOC100128882 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100128882 Gene

No ASD Table

Relevant External Links for LOC100128882 Gene

GeneLoc Exon Structure for
LOC100128882

Expression for LOC100128882 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LOC100128882 Gene

genes like me logo Genes that share expression patterns with LOC100128882: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for LOC100128882 Gene

Orthologs for LOC100128882 Gene

Evolution for LOC100128882 Gene

ENSEMBL:
Gene Tree for LOC100128882 (if available)
TreeFam:
Gene Tree for LOC100128882 (if available)

No data available for Orthologs for LOC100128882 Gene

Paralogs for LOC100128882 Gene

No data available for Paralogs for LOC100128882 Gene

Variants for LOC100128882 Gene

Sequence variations from dbSNP and Humsavar for LOC100128882 Gene

SNP ID Clin Chr 16 pos Sequence Context AA Info Type
rs10606433 -- 88,528,132(+) GTGAA(-/GAA)GGAGC intron-variant, cds-indel
rs1105368 -- 88,515,826(+) TCCCC(A/G)TCACT intron-variant, nc-transcript-variant
rs111067846 -- 88,520,567(+) ATGGA(C/T)GGATG intron-variant
rs111172642 -- 88,519,623(+) GGATG(C/G)ATGAT intron-variant
rs111172643 -- 88,519,662(+) GGATG(A/G)ATGGA intron-variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Relevant External Links for LOC100128882 Gene

Disorders for LOC100128882 Gene

No disorders were found for LOC100128882 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC100128882 Gene

Publications for LOC100128882 Gene

No publications were found for LOC100128882 Gene.

Products for LOC100128882 Gene

Sources for LOC100128882 Gene

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