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Aliases for LNCPRESS1 Gene

Subcategory (RNA class) for LNCPRESS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for LNCPRESS1 Gene

  • LncRNA P53 Regulated And ESC Associated 1 2 3 5
  • LncRNA P53 Regulated And ESC Specific 1 2

External Ids for LNCPRESS1 Gene

Summaries for LNCPRESS1 Gene

GeneCards Summary for LNCPRESS1 Gene

LNCPRESS1 (LncRNA P53 Regulated And ESC Associated 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LNCPRESS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LNCPRESS1 Gene

Genomics for LNCPRESS1 Gene

Regulatory Elements for LNCPRESS1 Gene

Enhancers for LNCPRESS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH07H101159 1.5 Ensembl ENCODE dbSUPER 10.4 -137.5 -137520 5 PKNOX1 ARID4B SIN3A GLI4 ZNF121 GLIS2 FOS KLF7 SP3 TSHZ1 AP1S1 SRRT NAT16 PPP1R35 GIGYF1 ZCWPW1 STAG3L5P MEPCE PCOLCE-AS1 RN7SL750P
GH07H101153 1.3 ENCODE dbSUPER 10.7 -143.8 -143839 3 HDGF PKNOX1 ATF1 ARID4B SIN3A DMAP1 GLI4 ZNF2 YY1 ZNF121 AP1S1 NAT16 SERPINE1 FIS1 AZGP1P2 LNCPRESS1 MIR4653
GH07H101289 1.3 Ensembl ENCODE dbSUPER 0.4 -9.1 -9108 1 CTCF PKNOX1 SAP130 TAF1 ZFP64 RAD21 YY1 EGR1 ZSCAN5C SCRT2 LOC101927746 COL26A1 FIS1 PILRB AZGP1P2 LNCPRESS1
GH07H101299 0.7 ENCODE dbSUPER 0.7 +0.6 555 1 POLR2A SETDB1 EZH2 LOC101927746 LNCPRESS1
GH07H101303 0.7 ENCODE dbSUPER 0.7 +3.7 3730 1 POLR2A EZH2 ETS1 LOC101927746 COL26A1 FIS1 DGAT2L7P LNCPRESS1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around LNCPRESS1 on UCSC Golden Path with GeneCards custom track

Genomic Location for LNCPRESS1 Gene

Chromosome:
7
Start:
101,299,613 bp from pter
End:
101,301,344 bp from pter
Size:
1,732 bases
Orientation:
Plus strand

Genomic View for LNCPRESS1 Gene

Genes around LNCPRESS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LNCPRESS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LNCPRESS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LNCPRESS1 Gene

Proteins for LNCPRESS1 Gene

Post-translational modifications for LNCPRESS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LNCPRESS1 Gene

Domains & Families for LNCPRESS1 Gene

Gene Families for LNCPRESS1 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with LNCPRESS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LNCPRESS1 Gene

Function for LNCPRESS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LNCPRESS1 Gene

Localization for LNCPRESS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LNCPRESS1 Gene

Pathways & Interactions for LNCPRESS1 Gene

SuperPathways for LNCPRESS1 Gene

No Data Available

Interacting Proteins for LNCPRESS1 Gene

Gene Ontology (GO) - Biological Process for LNCPRESS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LNCPRESS1 Gene

Drugs & Compounds for LNCPRESS1 Gene

No Compound Related Data Available

Transcripts for LNCPRESS1 Gene

mRNA/cDNA for LNCPRESS1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LNCPRESS1 Gene

No ASD Table

Relevant External Links for LNCPRESS1 Gene

GeneLoc Exon Structure for
LNCPRESS1
ECgene alternative splicing isoforms for
LNCPRESS1

Expression for LNCPRESS1 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LNCPRESS1 Gene

Orthologs for LNCPRESS1 Gene

Evolution for LNCPRESS1 Gene

ENSEMBL:
Gene Tree for LNCPRESS1 (if available)
TreeFam:
Gene Tree for LNCPRESS1 (if available)

No data available for Orthologs for LNCPRESS1 Gene

Paralogs for LNCPRESS1 Gene

No data available for Paralogs for LNCPRESS1 Gene

Variants for LNCPRESS1 Gene

Sequence variations from dbSNP and Humsavar for LNCPRESS1 Gene

SNP ID Clin Chr 07 pos Sequence Context AA Info Type
rs1000284444 -- 101,297,868(+) TGGGA(A/G)TTTGA upstream-variant-2KB
rs1000842164 -- 101,299,405(+) CGAGT(A/G)CTGAC upstream-variant-2KB
rs1001460404 -- 101,300,321(+) CGTCC(C/T)GCGAG intron-variant
rs1001663862 -- 101,301,266(+) TTAAT(A/G)TGAAC nc-transcript-variant
rs1001950430 -- 101,301,478(+) GTACA(C/T)TGTCA downstream-variant-500B

Relevant External Links for LNCPRESS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LNCPRESS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LNCPRESS1 Gene

Disorders for LNCPRESS1 Gene

Relevant External Links for LNCPRESS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
LNCPRESS1

No disorders were found for LNCPRESS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LNCPRESS1 Gene

Publications for LNCPRESS1 Gene

  1. LncPRESS1 Is a p53-Regulated LncRNA that Safeguards Pluripotency by Disrupting SIRT6-Mediated De-acetylation of Histone H3K56. (PMID: 27912097) Jain AK … Barton MC (Molecular cell 2016) 2 3 60

Products for LNCPRESS1 Gene

Sources for LNCPRESS1 Gene

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