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Aliases & Descriptions for LMO2
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc
, and/or 7 Ensembl ,
8 miRBase )About This Section
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Aliases RBTN2 1 , 2 , 3 RBTNL1 2 , 3 , 5 RHOM2 1 , 2 , 3 , 5 TTG2 1 , 2 , 3 , 5
Descriptions Cysteine-rich protein TTG-2 3 LIM domain only 2 2 LIM domain only 2 (rhombotin-like 1) 2 LIM domain only protein 2 3 T-cell translocation gene 2 2 T-cell translocation protein 2 3 rhombotin 2 2 rhombotin-like 1 2
Search outside databases for aliases for LMO2 genePrevious GC identifers: GC11M035411 GC11M034557 GC11M033919 GC11M033844
Summaries for LMO2 (According to Entrez Gene ,
Wikipedia's
Gene Wiki ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
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EntrezGene summary for LMO2 : LMO2 encodes a cysteine-rich, two LIM-domain protein that is required for yolk sac erythropoiesis.The LMO2 protein has a central and crucial role in hematopoietic development and is highlyconserved. The LMO2 transcription start site is located approximately 25 kb downstream from the11p13 T-cell translocation cluster (11p13 ttc), where a number T-cell acute lymphoblasticleukemia-specific translocations occur. Alternative splicing results in multiple transcriptvariants encoding different isoforms. UniProtKB/Swiss-Prot: RBTN2_HUMAN, P25791 Function : Acts with TAL1/SCL to regulate red blood cell development. Also acts with LDB1 tomaintain erythroid precursors in an immature state
Gene Wiki entry for LMO2
Genomic Location for LMO2
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 36) ,
and/or miRBase ,
Genomic Views according to
UCSC and
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Transcription factor binding sites according to
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Genomic View : UCSC Golden Path with GeneCards custom track Transcription factor binding sites upstream to the LMO2 gene Entrez Gene cytogenetic band: 11p13 Ensembl cytogenetic band: 11p13 HGNC cytogenetic band: 11p13 LMO2 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc gene densities for chromosome 11 GeneLoc Exon Structure
GeneLoc location for GC11M033836:
(about GC identifiers )
Start:
33,836,698 bp from pter
End:
33,870,412 bp from pter
Size:
33,715 bases
Orientation:
minus strand
RefSeq DNA sequence: NC_000011.8 NT_009237.17 Proteins for LMO2
(According to
1 UniProtKB ,
and/or Ensembl ,
Phosphorylation sites according to 2 Phosphosite ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Enzo Life Sciences ,
Abnova ,
OriGene and/or,
Abcam ,
Biochemical Assays by
Invitrogen ,
Millipore ,
R&D Systems ,
Cell Signaling Technology , and/or
Enzo Life Sciences ,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene ,
Antibodies by Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Cell Signaling Technology ,
Abcam ,
Abnova , and/or
Novus Biologicals )
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UniProtKB/Swiss-Prot: RBTN2_HUMAN, P25791 (See
protein sequence )Recommended Name: Rhombotin-2 Size : 158 amino acids; 18358 Da
Subunit : Interacts via its LIM domains with ELF2 and LBD1. Also interacts with basichelix-loop-helix protein TAL1/SCL and can assemble in a complex with LMO2 and TAL1/SCL (Bysimilarity). Interacts with BEX2 and KDM5A
Subcellular location : Nucleus (Potential)
Secondary accessions : Q9HD58Alternative splicing : 2 isoforms : P25791-1 P25791-2
Post-translational modifications:
View phosphorylation sites using PhosphoSite 2
REFSEQ proteins (3 alternative transcripts):
NP_001135787.1 NP_001135788.1 NP_005565.2 ENSEMBL proteins: ENSP00000257818 ENSP00000379175 Human Recombinant Proteins               OriGene Purified Recombinant Human Protein: LMO2 1 Gene Ontology (GO) cellular component term (links to tree view) :
GO ID Qualified GO term Evidence PubMed IDs GO:0005634 nucleus
IEA --
About this table Antibodies for LMO2: Assays for LMO2:
Protein
Domains/ Families for LMO2(According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
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Graphical View of Domain Structure for InterPro Entry P25791 ProtoNet protein and cluster: P25791
1 Blocks protein family : IPB001781 Zn-binding protein UniProtKB/Swiss-Prot: RBTN2_HUMAN, P25791 Domain : The second LIM zinc-binding domain interacts with KDM5ASimilarity : Contains 2 LIM zinc-binding domains
Gene Function for LMO2
(According to MGI Jun 06 2009, UniProtKB ,
IUBMB ,and/or Genatlas ,
shRNA from
OriGene ,
Sigma-Aldrich , RNAi from
Sigma-Aldrich ,
RNAi Products ,
Clones , and
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SYBR primers from OriGene ,
Cell-based Assays from Millipore ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 3 ): NM_001142315 Applied Biosystems Silencer ® siRNAs for LMO2 Sigma-Aldrich siRNA for LMO2 Sigma-Aldrich shRNA for LMO2 Explore Sigma-Aldrich super-pooled esiRNAs                OriGene GFP tagged cDNA clones in CMV expression vector (see all 3 ): NM_001142315                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 3 ): NM_001142315                                  untagged cDNA clones in CMV expression vector (see all 3 ): NM_001142315  Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_005574 UniProtKB/Swiss-Prot: RBTN2_HUMAN, P25791 Function : Acts with TAL1/SCL to regulate red blood cell development. Also acts with LDB1 tomaintain erythroid precursors in an immature state
Genatlas biochemistry entry for LMO2 :LIM domain only 2,rhombotin 2,involved in association with LMO1 (and others),in the formation ofmultimeric DNA-binding complex for the generation of hematopoietic lineages and angiogenesis (inmice)
13 MGI mutant phenotypes (inferred from 4 alleles ) (MGI details for Lmo2) :3 Gene Ontology (GO) molecular function terms (links to tree view) :
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Pathways & Interactions for LMO2
(Pathways according to Invitrogen
(maps by GeneGo ),
Millipore ,
Cell Signaling Technology ,
Sigma-Aldrich ,
KEGG
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Proteins Network according to
SABiosciences ,
Interactions according to 1 UniProtKB ,
2 MINT , and/or
3 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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Gene Network CentralTM Interacting Genes and Proteins Network for LMO2 5/38 Interacting proteins for LMO2 (ENSP00000257818 3 P25791 2 ) via UniProtKB, MINT, and/or STRING (see all 38
)About this table 1 Gene Ontology (GO) biological process term (links to tree view) :
GO ID Qualified GO term Evidence PubMed IDs GO:0007275 multicellular organismal development
TAS 1923511
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Drugs & Compounds for LMO2 (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
Sigma-Aldrich , Tocris Bioscience , and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB )
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Browse Tocris compounds for LMO2 2 Novoseek chemical compound relationships for LMO2 gene
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Transcripts for LMO2(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
non coding RNAs according to
RNAdb ,
ESTs according to GeneTide ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 3 ): NM_001142315 Sigma-Aldrich siRNA for LMO2 Sigma-Aldrich shRNA for LMO2 Explore Sigma-Aldrich super-pooled esiRNAs
Applied Biosystems Silencer ® siRNAs: NM_001142315 NM_001142316 NM_005574
REFSEQ mRNAs for LMO2 gene (3 alternative transcripts): NM_001142315.1 NM_001142316.1 NM_005574.3
Applied Biosystems TaqMan ® Gene Expression Assays: NM_001142315 NM_001142316 NM_005574
               OriGene GFP tagged cDNA clones in CMV expression vector (see all 3 ): NM_001142315                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 3 ): NM_001142315                                  untagged cDNA clones in CMV expression vector (see all 3 ): NM_001142315  
Additional cDNA sequence: AF257211.1 AK127915.1 BC034041.1 BC035607.1 BC042426.1 BC073973.1 CR604507.1 CR625714.1 X61118.1
9 DOTS entries : DT.454509 DT.100775807 DT.100707202 DT.444566 DT.95188348 DT.95161059 DT.97808158 DT.87008922 DT.87015072
24/151 AceView cDNA sequences (see all 151
):BF340978 AI247832 AW235360 AA280651 AA742325 CR614368 CR604507 CR625714 AI302050 AI052253 AA447059 AA907895 AL534189 H90810 BX373857 AI291194 AA443672 AA987902 AW172398 AI128847 BU676547 AW665040 AA464544 AI359899
highest scoring ESTs for LMO2 :AA056578 AA258970 AA261902 AA280651 AA282029 AA363913 AA418542 AA418607 AA443672 AA447059
Unigene Cluster for LMO2: LIM domain only 2 (rhombotin-like 1) Hs.34560 [show with all ESTs ] Unigene Representative Sequence: X61118 GeneLoc Exon Structure 5/7 Alternative Splicing Database (ASD) splice patterns (SP) for LMO2 (see all 7
) ExUns: 1 ^ 2 ^ 3 ^ 4 ^ 5 ^ 6 ^ 7a · 7b · 7c ^ 8 ^ 9 ^ 10a · 10b · 10c ^ 11a · 11b SP1 :           -       -                 SP2 :                       -           SP3 :                       -   -         SP4 :     -   -   -   -                       SP5 :                                
About this scheme ECgene alternative splicing isoforms for LMO2 2 Ensembl transcripts including schematic representations : ENST00000257818
ENST00000395833
Expression for LMO2
(Experimental results according to
1 GeneNote
and GNF BioGPS ,
probe sets-to-genes annotations according to
2 GeneAnnot ,
3 GeneTide ,
Sets of similar genes according to GeneDecks ,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP ,
plus additional links to
SOURCE , and/or
GNF
BioGPS , and/or
EXPOLDB , and/or
UniProtKB ,
Expression Assays from
Applied Biosystems
)
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LMO2 expression in normal and diseased human tissues Applied Biosystems TaqMan ® Gene Expression Assays for LMO2 1 / 2 / 3
3 probe-sets matching LMO2 gene Data from
(Publications) and GNF BioGPS About these images About these images CGAP SAGE TAG: --SOURCE GeneReport for Unigene cluster: Hs.34560 Expression variation in blood from EXPOLDB for LMO2
Orthologs for LMO2
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
and/or
5 MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase ,
Gene Trees according to Ensembl )
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Orthologs for LMO2 gene from 5/8 species (see all 8
)
About this table Species with no ortholog for LMO2 ENSEMBL Gene Tree for LMO2 Paralogs for LMO2 (Paralogs according to 1 HomoloGene and 2 Ensembl , Pseudogenes according to 3 Pseudogene.org )About This Section
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Paralogs for LMO2 gene LMO3 2 LMO1 2
SNPs/Variants for LMO2 (According to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE , and
UniProtKB ,
Linkage Disequilibrium by HapMap ,
Genotyping Reagents from
Applied Biosystems )
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HapMap Linkage Disequilibrium images for LMO2 (up to first 250kb)
Disorders & Mutations for LMO2
(in which this Gene is Involved, According to
OMIM, UniProtKB ,
Novoseek , PharmGKB ,
Genatlas , GeneTests ,
Blood group antigen gene mutations by BGMUT ,
HGMD, GAD ,
HuGE Navigator ,
BCGD ,
and/or TGDB .)
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OMIM: 180385 UniProtKB/Swiss-Prot: RBTN2_HUMAN, P25791
A chromosomal aberration involving LMO2 may be a cause of a form of T-cell acutelymphoblastic leukemia (T-ALL). Translocation t(11,14)(p13;q11) with TCRD
10/16 Novoseek disease relationships for LMO2 gene (see all 16
)
Disease
Score
Articles
PubMed IDs for Articles with Shared Sentences (# sentences)
t-all
87.01
44
7731686 (3), 16873670 (3), 9020185 (3), 17268520 (3) (see all 17 )
severe combined immunodeficiency, x-linked
80.53
3
19440365 (1), 17726455 (1), 18227842 (1)
leukemia t-cell
76.47
16
14645513 (2), 12727888 (1), 19440365 (1), 15994290 (1) (see all 13 )
leukemogenesis
73.68
6
17726455 (1), 7475267 (1), 7544155 (1), 17268520 (1)
leukemia
57.08
24
19440365 (4), 17910069 (2), 9209362 (1), 9214632 (1) (see all 12 )
acute leukemia
55.01
11
9209362 (2), 10197599 (1), 9872335 (1), 15198727 (1) (see all 8 )
lymphoma lymphoblastic
42.77
2
9116269 (1)
severe combined immunodeficiency
28.71
2
15190153 (1), 15195349 (1)
premalignant
15.61
1
14564000 (1)
chromosomal aberrations
8.68
1
8605871 (1)
About this table Genatlas disease: LMO2 acute lymphoblastic leukemia (T-ALL),with translocations t(11;14)(p13;q11),t(7;11)(p35;p13) Human Genome Epidemiology Navigator: LMO2 (2 documents) Tumor Gene Database : LMO2
Medical News for LMO2 (Possibly Related Articles in
Doctor's Guide )
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--
Publications for LMO2 (in
PubMed .
Associations of this gene to articles via
1 Novoseek ,
2 HGNC ,
3 Entrez Gene ,
4 UniProtKB/Swiss-Prot ,
5 UniProtKB/TrEMBL ,
6 GAD , and/or
7 PharmGKB )
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10/129 PubMed articles for LMO2 gene (see all 129
): T-cell oncogene rhombotin-2 interacts with retinoblastoma-binding protein 2. (PubMed id 9129143) 1, 3, 4 Mao S.... Goorha R.M. (1997) Human Bex2 interacts with LMO2 and regulates the transcriptional activity of a novel DNA-binding complex. (PubMed id 16314316) 1, 3, 4 Han C.... Peng X. (2005) The rhombotin family of cysteine-rich LIM-domain oncogenes: distinct members are involved in T-cell translocations to human chromosomes 11p15 and 11p13. (PubMed id 2034676) 1, 2, 3 Boehm T....Rabbitts T.H. (1991) TTG-2, a new gene encoding a cysteine-rich protein with the LIM motif, is overexpressed in acute T-cell leukaemia with the t(11;14)(p13;q11). (PubMed id 1923511) 1, 3, 4 Royer-Pokora B.... Ludwig W.D. (1991) The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334) 3, 4 Gerhard D.S....Malek J. (2004) Ectopic retroviral expression of LMO2, but not IL2Rgamma, blocks human T-cell development from CD34+ cells: implications for leukemogenesis in gene therapy. (PubMed id 17268520) 1, 3 Pike-Overzet K....Staal F.J. (2007) Different chromosomal breakpoints impact the level of LMO2 expression in T-ALL. (PubMed id 17360939) 1, 3 Dik W.A....Langerak A.W. (2007) The cryptic chromosomal deletion del(11)(p12p13) as a new activation mechanism of LMO2 in pediatric T-cell acute lymphoblastic leukemia. (PubMed id 16873670) 1, 3 Van Vlierberghe P....Pieters R. (2006) Elf-2, a rhombotin-2 binding ets transcription factor: discovery and potential role in T cell leukemia. (PubMed id 9001422) 1, 3 Wilkinson D.A....Goorha R.M. (1997) Assembly of the oncogenic DNA-binding complex LMO2-Ldb1-TAL1-E12. (PubMed id 17910069) 1, 3 Ryan D.P....Matthews J.M. (2008)
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Genome Databases showing LMO2
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
and/or
H-InvDB )
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Other Databases showing LMO2
(According to HUGE )
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Specialized Databases showing LMO2 (According to ATLAS , HORDE , IMGT , MTDB, LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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-- Services for LMO2 (Reagents available from Applied Biosystems , Antibodies and assays by Cell
Signaling Technology , Abcam , Novus Biologicals ,Sigma-Aldrich , R&D Systems , Millipore , Abnova , and/or Invitrogen , Clones available from OriGene ,and/or Invitrogen , Drugs and/or compounds by Sigma-Aldrich , Enzo Life Sciences , and/or Tocris Bioscience )About This Section
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