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Aliases for LMNTD1 Gene

Aliases for LMNTD1 Gene

  • Lamin Tail Domain Containing 1 2 3
  • Intermediate Filament Tail Domain-Containing Protein 1 3 4
  • Intermediate Filament Tail Domain Containing 1 2 3
  • IFLTD1 3 4
  • Lamin Tail Domain-Containing Protein 1 3
  • PAS1C1 3

External Ids for LMNTD1 Gene

Previous Symbols for LMNTD1 Gene

  • IFLTD1

Summaries for LMNTD1 Gene

GeneCards Summary for LMNTD1 Gene

LMNTD1 (Lamin Tail Domain Containing 1) is a Protein Coding gene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LMNTD1 Gene

Genomics for LMNTD1 Gene

Genomic Location for LMNTD1 Gene

Start:
25,409,307 bp from pter
End:
25,648,579 bp from pter
Size:
239,273 bases
Orientation:
Minus strand

Genomic View for LMNTD1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for LMNTD1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LMNTD1 Gene

No data available for Regulatory Elements for LMNTD1 Gene

Proteins for LMNTD1 Gene

  • Protein details for LMNTD1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8N9Z9-LMTD1_HUMAN
    Recommended name:
    Lamin tail domain-containing protein 1
    Protein Accession:
    Q8N9Z9
    Secondary Accessions:
    • B4DL27
    • B4DY70
    • Q8IY38

    Protein attributes for LMNTD1 Gene

    Size:
    388 amino acids
    Molecular mass:
    43408 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for LMNTD1 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for LMNTD1 Gene

Proteomics data for LMNTD1 Gene at MOPED

Post-translational modifications for LMNTD1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LMNTD1 Gene

Domains for LMNTD1 Gene

Protein Domains for LMNTD1 Gene

InterPro:
ProtoNet:

Graphical View of Domain Structure for InterPro Entry

Q8N9Z9

UniProtKB/Swiss-Prot:

LMTD1_HUMAN
Domain:
  • Contains 1 LTD domain.:
    • Q8N9Z9
Family:
  • Belongs to the intermediate filament family.:
    • Q8N9Z9
genes like me logo Genes that share domains with LMNTD1: view

No data available for Gene Families and Suggested Antigen Peptide Sequences for LMNTD1 Gene

Function for LMNTD1 Gene

Gene Ontology (GO) - Molecular Function for LMNTD1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005198 structural molecule activity IEA --
genes like me logo Genes that share ontologies with LMNTD1: view

Phenotypes for LMNTD1 Gene

genes like me logo Genes that share phenotypes with LMNTD1: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for LMNTD1 Gene

Localization for LMNTD1 Gene

Gene Ontology (GO) - Cellular Components for LMNTD1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus --
GO:0005635 nuclear envelope IEA --
GO:0005737 cytoplasm IEA --
GO:0005882 intermediate filament IEA --
genes like me logo Genes that share ontologies with LMNTD1: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Subcellular locations from COMPARTMENTS for LMNTD1 Gene

Pathways for LMNTD1 Gene

SuperPathways for LMNTD1 Gene

No Data Available

Interacting Proteins for LMNTD1 Gene

Gene Ontology (GO) - Biological Process for LMNTD1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0008283 cell proliferation IEA --
genes like me logo Genes that share ontologies with LMNTD1: view

No data available for Pathways by source for LMNTD1 Gene

Transcripts for LMNTD1 Gene

mRNA/cDNA for LMNTD1 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for LMNTD1 Gene

ExUns: 1a · 1b · 1c ^ 2 ^ 3 ^ 4 ^ 5 ^ 6 ^ 7 ^ 8 ^ 9 ^ 10a · 10b
SP1: -
SP2: -

Relevant External Links for LMNTD1 Gene

GeneLoc Exon Structure for
LMNTD1
ECgene alternative splicing isoforms for
LMNTD1

Expression for LMNTD1 Gene

mRNA expression in normal human tissues for LMNTD1 Gene

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, and MOPED for LMNTD1 Gene

genes like me logo Genes that share expressions with LMNTD1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for LMNTD1 Gene

Orthologs for LMNTD1 Gene

This gene was present in the common ancestor of chordates.

Orthologs for LMNTD1 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia IFLTD1 35
  • 98.61 (n)
  • 97.56 (a)
IFLTD1 36
  • 98 (a)
OneToOne
cow
(Bos Taurus)
Mammalia IFLTD1 35
  • 74.86 (n)
  • 60.55 (a)
IFLTD1 36
  • 57 (a)
OneToOne
dog
(Canis familiaris)
Mammalia IFLTD1 35
  • 77.69 (n)
  • 67.17 (a)
IFLTD1 36
  • 63 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Ifltd1 35
  • 66.67 (n)
  • 55.61 (a)
Ifltd1 16
Ifltd1 36
  • 52 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia IFLTD1 36
  • 35 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Ifltd1 35
  • 67.03 (n)
  • 56.33 (a)
lizard
(Anolis carolinensis)
Reptilia IFLTD1 36
  • 38 (a)
OneToOne
sea squirt
(Ciona savignyi)
Ascidiacea -- 36
  • 15 (a)
OneToOne
Species with no ortholog for LMNTD1:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for LMNTD1 Gene

ENSEMBL:
Gene Tree for LMNTD1 (if available)
TreeFam:
Gene Tree for LMNTD1 (if available)

Paralogs for LMNTD1 Gene

No data available for Paralogs for LMNTD1 Gene

Variants for LMNTD1 Gene

Sequence variations from dbSNP and Humsavar for LMNTD1 Gene

SNP ID Clin Chr 12 pos Sequence Context AA Info Type MAF
rs2357 -- 25,624,854(-) TTAGA(A/G)GGAGG intron-variant
rs166778 -- 25,614,196(+) TGTCT(A/G)TTCCT intron-variant
rs169402 -- 25,529,412(+) AGGTA(C/T)CCCTG intron-variant
rs172147 -- 25,528,686(+) GAGCC(C/T)ACCTC intron-variant
rs175915 -- 25,534,740(+) agact(A/G)aaaaa intron-variant

Relevant External Links for LMNTD1 Gene

HapMap Linkage Disequilibrium report
LMNTD1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for LMNTD1 Gene

Disorders for LMNTD1 Gene

No disorders were found for LMNTD1 Gene.

No data available for UniProtKB/Swiss-Prot for LMNTD1 Gene

Publications for LMNTD1 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 2 3
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4
  3. Sequence comparison of human and mouse genes reveals a homologous block structure in the promoter regions. (PMID: 15342556) Suzuki Y. … Sugano S. (Genome Res. 2004) 3
  4. Pas1c1 is a candidate for the mouse pulmonary adenoma susceptibility 1 locus. (PMID: 15688036) Wang M. … You M. (Oncogene 2005) 3
  5. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3

Products for LMNTD1 Gene

Sources for LMNTD1 Gene

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