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Aliases for LL22NC01-81G9.3 Gene

Subcategory (RNA class) for LL22NC01-81G9.3 Gene

ncRNA

Quality Score for this RNA gene is

2

Aliases for LL22NC01-81G9.3 Gene

  • Uncharacterized Protein FLJ39582-Like 3 5

External Ids for LL22NC01-81G9.3 Gene

Previous GeneCards Identifiers for LL22NC01-81G9.3 Gene

  • GC22P037363

Summaries for LL22NC01-81G9.3 Gene

GeneCards Summary for LL22NC01-81G9.3 Gene

LL22NC01-81G9.3 (Uncharacterized Protein FLJ39582-Like) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LL22NC01-81G9.3 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LL22NC01-81G9.3 Gene

Genomics for LL22NC01-81G9.3 Gene

Regulatory Elements for LL22NC01-81G9.3 Gene

Enhancers for LL22NC01-81G9.3 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH22H037227 2 FANTOM5 Ensembl ENCODE dbSUPER 14.6 +271.5 271460 18 HDGF PKNOX1 ARNT ZNF143 ZNF207 FOS REST ZNF592 MEF2D SMARCA4 RAC2 LL22NC01-81G9.3 ENSG00000229971 CYTH4 GGA1 CSF2RB SSTR3 C1QTNF6 NCF4 SH3BP1
GH22H037014 1.6 Ensembl ENCODE dbSUPER 14.8 +55.4 55426 12 HDGF PKNOX1 ARNT ARID4B SIN3A DMAP1 ZNF2 YY1 ZNF766 ZNF143 ENSG00000229971 MPST RBFOX2 LL22NC01-81G9.3 KCTD17 ENSG00000231467 TMPRSS6 NCF4-AS1 NCF4 IL2RB
GH22H037683 1.1 ENCODE 14.6 +720.5 720512 3 PKNOX1 MLX ZFP64 ARID4B SIN3A FEZF1 DMAP1 ZNF2 YY1 ZNF416 ENSG00000230912 CSNK1E DDX17 CBY1 TRIOBP ANKRD54 ENSG00000228274 LL22NC01-81G9.3 FAM227A EIF3L
GH22H037841 1.1 ENCODE 14.6 +878.3 878322 3 HDGF PKNOX1 ARNT ARID4B SIN3A ZNF2 YY1 SLC30A9 ZNF143 ZNF207 GGA1 ANKRD54 LL22NC01-81G9.3 PLA2G6 PIR42346 MIR658
GH22H036976 1.3 Ensembl ENCODE 0.4 +12.6 12637 1 PKNOX1 ATF1 SIN3A ARID4B YY1 GLIS2 ELK1 ZNF143 ZNF207 ATF7 MPST TEX33 LL22NC01-81G9.3
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around LL22NC01-81G9.3 on UCSC Golden Path with GeneCards custom track

Genomic Location for LL22NC01-81G9.3 Gene

Chromosome:
22
Start:
36,965,248 bp from pter
End:
36,968,172 bp from pter
Size:
2,925 bases
Orientation:
Plus strand

Genomic View for LL22NC01-81G9.3 Gene

Genes around LL22NC01-81G9.3 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LL22NC01-81G9.3 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LL22NC01-81G9.3 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LL22NC01-81G9.3 Gene

Proteins for LL22NC01-81G9.3 Gene

Post-translational modifications for LL22NC01-81G9.3 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LL22NC01-81G9.3 Gene

Domains & Families for LL22NC01-81G9.3 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LL22NC01-81G9.3 Gene

Function for LL22NC01-81G9.3 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LL22NC01-81G9.3 Gene

Localization for LL22NC01-81G9.3 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LL22NC01-81G9.3 Gene

Pathways & Interactions for LL22NC01-81G9.3 Gene

SuperPathways for LL22NC01-81G9.3 Gene

No Data Available

Interacting Proteins for LL22NC01-81G9.3 Gene

Gene Ontology (GO) - Biological Process for LL22NC01-81G9.3 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LL22NC01-81G9.3 Gene

Drugs & Compounds for LL22NC01-81G9.3 Gene

No Compound Related Data Available

Transcripts for LL22NC01-81G9.3 Gene

mRNA/cDNA for LL22NC01-81G9.3 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LL22NC01-81G9.3 Gene

No ASD Table

Relevant External Links for LL22NC01-81G9.3 Gene

GeneLoc Exon Structure for
LL22NC01-81G9.3

Expression for LL22NC01-81G9.3 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LL22NC01-81G9.3 Gene

genes like me logo Genes that share expression patterns with LL22NC01-81G9.3: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LL22NC01-81G9.3 Gene

Orthologs for LL22NC01-81G9.3 Gene

Evolution for LL22NC01-81G9.3 Gene

ENSEMBL:
Gene Tree for LL22NC01-81G9.3 (if available)
TreeFam:
Gene Tree for LL22NC01-81G9.3 (if available)

No data available for Orthologs for LL22NC01-81G9.3 Gene

Paralogs for LL22NC01-81G9.3 Gene

No data available for Paralogs for LL22NC01-81G9.3 Gene

Variants for LL22NC01-81G9.3 Gene

Sequence variations from dbSNP and Humsavar for LL22NC01-81G9.3 Gene

SNP ID Clin Chr 22 pos Sequence Context AA Info Type
rs1000430743 -- 36,964,346(+) TGGGG(G/T)TGAAG upstream-variant-2KB
rs1001921299 -- 36,963,868(+) TTACA(A/G)ATTGA upstream-variant-2KB
rs1002994702 -- 36,965,021(+) ATCTT(A/T)AAAAA upstream-variant-2KB
rs1003584644 -- 36,966,401(+) ACTCT(A/G)TTGCC nc-transcript-variant
rs1003941055 -- 36,966,640(+) CGCAG(A/G)ATGGC intron-variant

Structural Variations from Database of Genomic Variants (DGV) for LL22NC01-81G9.3 Gene

Variant ID Type Subtype PubMed ID
esv34015 CNV loss 18971310
nsv459882 CNV gain 19166990
nsv588984 CNV gain 21841781
nsv834187 CNV loss 17160897

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Relevant External Links for LL22NC01-81G9.3 Gene

Disorders for LL22NC01-81G9.3 Gene

Relevant External Links for LL22NC01-81G9.3

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
LL22NC01-81G9.3

No disorders were found for LL22NC01-81G9.3 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LL22NC01-81G9.3 Gene

Publications for LL22NC01-81G9.3 Gene

No publications were found for LL22NC01-81G9.3 Gene.

Products for LL22NC01-81G9.3 Gene

Sources for LL22NC01-81G9.3 Gene

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