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Aliases for LIPC Gene

Aliases for LIPC Gene

  • Lipase C, Hepatic Type 2 3 5
  • Triacylglycerol Lipase 2 3
  • Lipase, Hepatic 2 3
  • Lipase Member C 3 4
  • Hepatic Lipase 3 4
  • EC 3.1.1.3 4 61
  • HTGL 3 4
  • HL 3 4
  • Hepatic Triacylglycerol Lipase 3
  • EC 3.1.1 61
  • HDLCQ12 3
  • LIPH 3

External Ids for LIPC Gene

Previous GeneCards Identifiers for LIPC Gene

  • GC15P054281
  • GC15P051771
  • GC15P056303
  • GC15P056440
  • GC15P056511
  • GC15P058702
  • GC15P035548

Summaries for LIPC Gene

Entrez Gene Summary for LIPC Gene

  • LIPC encodes hepatic triglyceride lipase, which is expressed in liver. LIPC has the dual functions of triglyceride hydrolase and ligand/bridging factor for receptor-mediated lipoprotein uptake. [provided by RefSeq, Jul 2008]

GeneCards Summary for LIPC Gene

LIPC (Lipase C, Hepatic Type) is a Protein Coding gene. Diseases associated with LIPC include Hepatic Lipase Deficiency and Diabetes Mellitus, Noninsulin-Dependent. Among its related pathways are Lipoprotein metabolism and triacylglycerol biosynthesis. GO annotations related to this gene include heparin binding and phospholipase activity. An important paralog of this gene is LPL.

UniProtKB/Swiss-Prot for LIPC Gene

  • Hepatic lipase has the capacity to catalyze hydrolysis of phospholipids, mono-, di-, and triglycerides, and acyl-CoA thioesters. It is an important enzyme in HDL metabolism. Hepatic lipase binds heparin.

Gene Wiki entry for LIPC Gene

No data available for Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LIPC Gene

Genomics for LIPC Gene

Regulatory Elements for LIPC Gene

Enhancers for LIPC Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
- Elite enhancer/Elite enhancer-gene association

Enhancers around LIPC on UCSC Golden Path with GeneCards custom track

Promoters for LIPC Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

Genomic Location for LIPC Gene

Chromosome:
15
Start:
58,410,569 bp from pter
End:
58,569,843 bp from pter
Size:
159,275 bases
Orientation:
Plus strand

Genomic View for LIPC Gene

Genes around LIPC on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LIPC Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LIPC Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LIPC Gene

Proteins for LIPC Gene

  • Protein details for LIPC Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    P11150-LIPC_HUMAN
    Recommended name:
    Hepatic triacylglycerol lipase
    Protein Accession:
    P11150
    Secondary Accessions:
    • A2RUB4
    • A8K9B6
    • O43571
    • P78529
    • Q99465

    Protein attributes for LIPC Gene

    Size:
    499 amino acids
    Molecular mass:
    55914 Da
    Quaternary structure:
    No Data Available

neXtProt entry for LIPC Gene

Post-translational modifications for LIPC Gene

  • Glycosylation at Asn 42, Asn 78, Asn 362, and Asn 397
  • Modification sites at PhosphoSitePlus

Other Protein References for LIPC Gene

Domains & Families for LIPC Gene

Gene Families for LIPC Gene

Suggested Antigen Peptide Sequences for LIPC Gene

Graphical View of Domain Structure for InterPro Entry

P11150

UniProtKB/Swiss-Prot:

LIPC_HUMAN :
  • Contains 1 PLAT domain.
  • Belongs to the AB hydrolase superfamily. Lipase family.
Domain:
  • Contains 1 PLAT domain.
Family:
  • Belongs to the AB hydrolase superfamily. Lipase family.
genes like me logo Genes that share domains with LIPC: view

Function for LIPC Gene

Molecular function for LIPC Gene

GENATLAS Biochemistry:
lipase,hepatic,53kDa,plasma lipid transport
UniProtKB/Swiss-Prot CatalyticActivity:
Triacylglycerol + H(2)O = diacylglycerol + a carboxylate.
UniProtKB/Swiss-Prot Function:
Hepatic lipase has the capacity to catalyze hydrolysis of phospholipids, mono-, di-, and triglycerides, and acyl-CoA thioesters. It is an important enzyme in HDL metabolism. Hepatic lipase binds heparin.

Enzyme Numbers (IUBMB) for LIPC Gene

Gene Ontology (GO) - Molecular Function for LIPC Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0004620 phospholipase activity TAS 3244012
GO:0004622 lysophospholipase activity IEA --
GO:0004806 triglyceride lipase activity TAS --
GO:0005515 protein binding IEA --
GO:0008201 heparin binding IEA --
genes like me logo Genes that share ontologies with LIPC: view
genes like me logo Genes that share phenotypes with LIPC: view

Human Phenotype Ontology for LIPC Gene

HPO Id HPO Name Alternative Ids Definition Synonyms

Animal Models for LIPC Gene

MGI Knock Outs for LIPC:

Animal Model Products

CRISPR Products

miRNA for LIPC Gene

miRTarBase miRNAs that target LIPC

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

No data available for Transcription Factor Targets and HOMER Transcription for LIPC Gene

Localization for LIPC Gene

Subcellular locations from UniProtKB/Swiss-Prot for LIPC Gene

Secreted.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for LIPC Gene COMPARTMENTS Subcellular localization image for LIPC gene
Compartment Confidence
endoplasmic reticulum 5
extracellular 5
endosome 2
cytoskeleton 1
cytosol 1
nucleus 1
peroxisome 1
plasma membrane 1

Gene Ontology (GO) - Cellular Components for LIPC Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005576 extracellular region TAS --
GO:0005615 extracellular space IEA,IDA 2839510
GO:0005769 early endosome IEA --
GO:0005770 late endosome IEA --
GO:0005788 endoplasmic reticulum lumen TAS --
genes like me logo Genes that share ontologies with LIPC: view

Pathways & Interactions for LIPC Gene

genes like me logo Genes that share pathways with LIPC: view

Gene Ontology (GO) - Biological Process for LIPC Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0001666 response to hypoxia IEA --
GO:0001889 liver development IEA --
GO:0006633 fatty acid biosynthetic process IDA 182536
GO:0006658 phosphatidylserine metabolic process IEA --
GO:0007623 circadian rhythm IEA --
genes like me logo Genes that share ontologies with LIPC: view

No data available for SIGNOR curated interactions for LIPC Gene

Drugs & Compounds for LIPC Gene

(48) Drugs for LIPC Gene - From: PharmGKB, HMDB, and Novoseek

Name Status Disease Links Group Role Mechanism of Action Clinical Trials
Fluvastatin Approved Pharma Competitive, Inhibitor HMGCR inhibitor 58
Pravastatin Approved Pharma Competitive, Inhibitor 147
Simvastatin Approved Pharma Competitive, Inhibitor HMG-CoA reductase inhibitor 503
Water Approved Pharma 0
arachidonic acid Experimental Nutra Activator 27

(70) Additional Compounds for LIPC Gene - From: HMDB and Novoseek

Name Synonyms Role CAS Number PubChem IDs PubMed IDs
(2E)-Decenoyl-CoA
  • (E)-S-2-decenoate
  • (E)-S-2-decenoate CoA
  • (E)-S-2-decenoate Coenzyme A
  • (E)-S-2-decenoic acid
  • 2-trans-Decenoyl-CoA
10018-95-8
(2E)-Dodecenoyl-CoA
  • (2E)-Dodec-2-enoyl-CoA
  • (2E)-Dodec-2-enoyl-Coenzyme A
  • 2-trans-Dodecenoyl-CoA
  • 2-trans-Dodecenoyl-Coenzyme A
1066-12-2
(2E)-Hexadecenoyl-CoA
  • (2E)-Hexadecenoyl-CoA
  • (2E)-Hexadecenoyl-Coenzyme A
  • trans-2-Hexadecenoyl-CoA
  • trans-2-Hexadecenoyl-Coenzyme A
4460-95-1
(2E)-Octenoyl-CoA
  • (E)-S-2-octenoate
  • (E)-S-2-octenoate CoA
  • (E)-S-2-octenoate Coenzyme A
  • (E)-S-2-octenoic acid
  • 2,3-trans-Octenoyl coenzyme A
10018-94-7
(2E)-Tetradecenoyl-CoA
  • (2E)-Tetradecenoyl-CoA
  • (2E)-Tetradecenoyl-Coenzyme A
  • Trans-tetra-dec-2-enoyl-CoA
  • Trans-tetra-dec-2-enoyl-CoA.
  • Trans-tetra-dec-2-enoyl-Coenzyme A
38795-33-4
genes like me logo Genes that share compounds with LIPC: view

Transcripts for LIPC Gene

Unigene Clusters for LIPC Gene

Lipase, hepatic:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for LIPC Gene

ExUns: 1a · 1b ^ 2 ^ 3 ^ 4 ^ 5a · 5b · 5c ^ 6a · 6b ^ 7a · 7b ^ 8a · 8b ^ 9 ^ 10
SP1:
SP2:
SP3: - - - -
SP4: - - -
SP5:

Relevant External Links for LIPC Gene

GeneLoc Exon Structure for
LIPC
ECgene alternative splicing isoforms for
LIPC

Expression for LIPC Gene

mRNA expression in normal human tissues for LIPC Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for LIPC Gene

This gene is overexpressed in Liver (x39.0).

Protein differential expression in normal tissues from HIPED for LIPC Gene

This gene is overexpressed in Colon muscle (39.7), Platelet (11.3), Liver (9.4), and Fetal Liver (8.6).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, and MOPED for LIPC Gene



Protein tissue co-expression partners for LIPC Gene

NURSA nuclear receptor signaling pathways regulating expression of LIPC Gene:

LIPC

SOURCE GeneReport for Unigene cluster for LIPC Gene:

Hs.654472
genes like me logo Genes that share expression patterns with LIPC: view

Primer Products

No data available for mRNA Expression by UniProt/SwissProt for LIPC Gene

Orthologs for LIPC Gene

This gene was present in the common ancestor of animals.

Orthologs for LIPC Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia LIPC 34
  • 84.48 (n)
  • 77.82 (a)
LIPC 35
  • 69 (a)
OneToOne
dog
(Canis familiaris)
Mammalia LIPC 34
  • 85.82 (n)
  • 79.03 (a)
HTGL 35
  • 77 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Lipc 34
  • 80.5 (n)
  • 76.48 (a)
Lipc 16
Lipc 35
  • 74 (a)
OneToOne
chimpanzee
(Pan troglodytes)
Mammalia LIPC 34
  • 99.13 (n)
  • 98.8 (a)
LIPC 35
  • 99 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Lipc 34
  • 80.56 (n)
  • 75.77 (a)
oppossum
(Monodelphis domestica)
Mammalia LIPC 35
  • 61 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia LIPC 35
  • 52 (a)
OneToOne
chicken
(Gallus gallus)
Aves LIPC 34
  • 67.76 (n)
  • 64.75 (a)
LIPC 35
  • 64 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia LIPC 35
  • 54 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia lipc 34
  • 62.04 (n)
  • 58.98 (a)
African clawed frog
(Xenopus laevis)
Amphibia Xl.17530 34
zebrafish
(Danio rerio)
Actinopterygii lipca 34
  • 60.64 (n)
  • 54.47 (a)
zgc64081 34
lipca 35
  • 49 (a)
OneToOne
fruit fly
(Drosophila melanogaster)
Insecta CG6472 36
  • 33 (a)
CG6847 36
  • 37 (a)
CG5966 35
  • 24 (a)
OneToMany
sea squirt
(Ciona savignyi)
Ascidiacea -- 35
  • 22 (a)
ManyToMany
-- 35
  • 21 (a)
ManyToMany
Species where no ortholog for LIPC was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for LIPC Gene

ENSEMBL:
Gene Tree for LIPC (if available)
TreeFam:
Gene Tree for LIPC (if available)

Paralogs for LIPC Gene

Paralogs for LIPC Gene

(7) SIMAP similar genes for LIPC Gene using alignment to 5 proteins:

genes like me logo Genes that share paralogs with LIPC: view

Variants for LIPC Gene

Polymorphic Variants from UniProtKB/Swiss-Prot for LIPC Gene

LIPC_HUMAN-P11150
Genetic variations in LIPC are associated with non-insulin-dependent diabetes mellitus susceptibility (NIDDM susceptibility) [MIM:125853].
LIPC_HUMAN-P11150
Genetic variations in LIPC define the high density lipoprotein cholesterol level quantitative trait locus 12 (HDLCQ12) [MIM:612797].

Sequence variations from dbSNP and Humsavar for LIPC Gene

SNP ID Clin Chr 15 pos Sequence Context AA Info Type
rs6078 - 58,541,794(+) ACGGC(A/G/T)TGCTA reference, missense
rs6083 - 58,545,811(+) TGCCA(A/G)TTTTG reference, missense
rs121912502 Hepatic lipase deficiency (HL deficiency) 58,548,387(+) CGACT(C/T)CTTGC reference, missense
rs113298164 Hepatic lipase deficiency (HL deficiency) 58,563,549(+) TATCA(C/T)GCTGG reference, missense
rs6079 - 58,563,654(+) ATGGA(A/G)CACAG reference, missense

Structural Variations from Database of Genomic Variants (DGV) for LIPC Gene

Variant ID Type Subtype PubMed ID
dgv2608n100 CNV gain 25217958
esv1002236 CNV gain 20482838
esv25142 CNV gain 19812545
esv2760372 CNV loss 21179565
esv2761874 CNV loss 21179565
esv3302978 CNV tandem duplication 20981092
esv3410982 CNV insertion 20981092
esv3581728 CNV loss 25503493
esv3581729 CNV loss 25503493
esv3581730 CNV loss 25503493
esv3636629 CNV loss 21293372
nsv1043362 CNV loss 25217958
nsv1047048 CNV loss 25217958
nsv1122971 CNV deletion 24896259
nsv1133218 CNV tandem duplication 24896259
nsv474584 CNV novel sequence insertion 20440878
nsv522373 CNV loss 19592680
nsv524065 CNV loss 19592680
nsv524098 CNV loss 19592680
nsv569598 CNV loss 21841781
nsv569600 CNV loss 21841781
nsv569601 CNV loss 21841781
nsv7266 OTHER inversion 18451855
nsv827345 CNV gain 20364138
nsv94680 CNV deletion 16902084

Variation tolerance for LIPC Gene

Residual Variation Intolerance Score: 77.3% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 2.31; 41.24% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for LIPC Gene

Human Gene Mutation Database (HGMD)
LIPC
SNPedia medical, phenotypic, and genealogical associations of SNPs for
LIPC

Disorders for LIPC Gene

MalaCards: The human disease database

(16) MalaCards diseases for LIPC Gene - From: OMIM, ClinVar, GeneTests, Orphanet, Swiss-Prot, DISEASES, Novoseek, and GeneCards

Disorder Aliases PubMed IDs
hepatic lipase deficiency
  • hmg coa lyase deficiency
diabetes mellitus, noninsulin-dependent
  • diabetes, type 2
hyperalphalipoproteinemia
  • cholesterol-ester transfer protein deficiency
hypertriglyceridemia
  • familial hypertriglyceridemia
lipase deficiency, combined
  • cld
- elite association - COSMIC cancer census association via MalaCards
Search LIPC in MalaCards View complete list of genes associated with diseases

UniProtKB/Swiss-Prot

LIPC_HUMAN
  • Hepatic lipase deficiency (HL deficiency) [MIM:614025]: A disorder characterized by elevated levels of beta-migrating very low density lipoproteins, and abnormally triglyceride-rich low and high density lipoproteins. {ECO:0000269 PubMed:10660332, ECO:0000269 PubMed:1301939}. Note=The disease is caused by mutations affecting the gene represented in this entry.

Genatlas disease for LIPC Gene

coronary atherosclerosis,premature,dyslipidemia

Relevant External Links for LIPC

Genetic Association Database (GAD)
LIPC
Human Genome Epidemiology (HuGE) Navigator
LIPC
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
LIPC
genes like me logo Genes that share disorders with LIPC: view

Publications for LIPC Gene

  1. The -250G>A promoter variant in hepatic lipase associates with elevated fasting serum high-density lipoprotein cholesterol modulated by interaction with physical activity in a study of 16,156 Danish subjects. (PMID: 18364377) Grarup N. … Pedersen O. (J. Clin. Endocrinol. Metab. 2008) 3 4 22 46 65
  2. The G-250A promoter polymorphism of the hepatic lipase gene predicts the conversion from impaired glucose tolerance to type 2 diabetes mellitus: the Finnish diabetes prevention study. (PMID: 15126514) Todorova B. … Laakso M. (J. Clin. Endocrinol. Metab. 2004) 3 4 22 46 65
  3. Association of polymorphisms in genes involved in lipoprotein metabolism with plasma concentrations of remnant lipoproteins and HDL subpopulations before and after hormone therapy in postmenopausal women. (PMID: 19489872) Lamon-Fava S. … Herrington D.M. (Clin. Endocrinol. (Oxf) 2010) 3 22 46 65
  4. Hepatic lipase, genetically elevated high-density lipoprotein, and risk of ischemic cardiovascular disease. (PMID: 19088157) Johannsen T.H. … Nordestgaard B.G. (J. Clin. Endocrinol. Metab. 2009) 3 22 46 65
  5. The environmental and genetic evidence for the association of hyperlipidemia and hypertension. (PMID: 19155782) Ruixing Y. … Shangling P. (J. Hypertens. 2009) 3 22 46 65

Products for LIPC Gene

Sources for LIPC Gene

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