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Aliases for LIPC Gene

Aliases for LIPC Gene

  • Lipase, Hepatic 2 3
  • HL 3 4 6
  • Lipase Member C 3 4
  • Hepatic Lipase 3 4
  • EC 3.1.1.3 4 63
  • HDLCQ12 3 6
  • LIPH 3 6
  • HTGL 3 4
  • Hepatic Triacylglycerol Lipase 3
  • EC 3.1.1 63

External Ids for LIPC Gene

Summaries for LIPC Gene

Entrez Gene Summary for LIPC Gene

  • LIPC encodes hepatic triglyceride lipase, which is expressed in liver. LIPC has the dual functions of triglyceride hydrolase and ligand/bridging factor for receptor-mediated lipoprotein uptake. [provided by RefSeq, Jul 2008]

GeneCards Summary for LIPC Gene

LIPC (Lipase, Hepatic) is a Protein Coding gene. Diseases associated with LIPC include hepatic lipase deficiency and hyperlipidemia due to hepatic triglyceride lipase deficiency. Among its related pathways are Metabolism and Metabolism. GO annotations related to this gene include heparin binding and low-density lipoprotein particle binding. An important paralog of this gene is LPL.

UniProtKB/Swiss-Prot for LIPC Gene

  • Hepatic lipase has the capacity to catalyze hydrolysis of phospholipids, mono-, di-, and triglycerides, and acyl-CoA thioesters. It is an important enzyme in HDL metabolism. Hepatic lipase binds heparin

Gene Wiki entry for LIPC Gene

No data available for Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LIPC Gene

Genomics for LIPC Gene

Genomic Location for LIPC Gene

Start:
58,410,569 bp from pter
End:
58,569,843 bp from pter
Size:
159,275 bases
Orientation:
Plus strand

Genomic View for LIPC Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for LIPC Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LIPC Gene

Regulatory Elements for LIPC Gene

Proteins for LIPC Gene

  • Protein details for LIPC Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    P11150-LIPC_HUMAN
    Recommended name:
    Hepatic triacylglycerol lipase
    Protein Accession:
    P11150
    Secondary Accessions:
    • A2RUB4
    • A8K9B6
    • O43571
    • P78529
    • Q99465

    Protein attributes for LIPC Gene

    Size:
    499 amino acids
    Molecular mass:
    55914 Da
    Quaternary structure:
    No Data Available

neXtProt entry for LIPC Gene

Proteomics data for LIPC Gene at MOPED

Post-translational modifications for LIPC Gene

  • Modification sites at PhosphoSitePlus
  • Glycosylation at Asn42, Asn78, Asn362, and Asn397

Other Protein References for LIPC Gene

Domains for LIPC Gene

Suggested Antigen Peptide Sequences for LIPC Gene

Graphical View of Domain Structure for InterPro Entry

P11150

UniProtKB/Swiss-Prot:

LIPC_HUMAN
Domain:
  • Contains 1 PLAT domain.:
    • P11150
Family:
  • Belongs to the AB hydrolase superfamily. Lipase family.:
    • P11150
genes like me logo Genes that share domains with LIPC: view

No data available for Gene Families for LIPC Gene

Function for LIPC Gene

Molecular function for LIPC Gene

GENATLAS Biochemistry: lipase,hepatic,53kDa,plasma lipid transport
UniProtKB/Swiss-Prot CatalyticActivity: Triacylglycerol + H(2)O = diacylglycerol + a carboxylate
UniProtKB/Swiss-Prot Function: Hepatic lipase has the capacity to catalyze hydrolysis of phospholipids, mono-, di-, and triglycerides, and acyl-CoA thioesters. It is an important enzyme in HDL metabolism. Hepatic lipase binds heparin

Enzyme Numbers (IUBMB) for LIPC Gene

Gene Ontology (GO) - Molecular Function for LIPC Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0004620 phospholipase activity TAS 3244012
GO:0004806 triglyceride lipase activity IDA 182536
GO:0005515 protein binding --
GO:0008201 heparin binding IEA --
GO:0016298 lipase activity --
genes like me logo Genes that share ontologies with LIPC: view
genes like me logo Genes that share phenotypes with LIPC: view

Animal Models for LIPC Gene

MGI Knock Outs for LIPC:

miRNA for LIPC Gene

miRTarBase miRNAs that target LIPC

No data available for Transcription Factor Targeting and HOMER Transcription for LIPC Gene

Localization for LIPC Gene

Subcellular locations from UniProtKB/Swiss-Prot for LIPC Gene

Secreted.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for LIPC Gene COMPARTMENTS Subcellular localization image for LIPC gene
Compartment Confidence
extracellular 5
cytoskeleton 1
cytosol 1
endoplasmic reticulum 1
nucleus 1
peroxisome 1
plasma membrane 1

Gene Ontology (GO) - Cellular Components for LIPC Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005576 extracellular region --
GO:0005615 extracellular space IDA 2839510
GO:0034364 high-density lipoprotein particle IEA --
genes like me logo Genes that share ontologies with LIPC: view

Pathways for LIPC Gene

genes like me logo Genes that share pathways with LIPC: view

Gene Ontology (GO) - Biological Process for LIPC Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006629 lipid metabolic process --
GO:0006633 fatty acid biosynthetic process IDA 182536
GO:0008203 cholesterol metabolic process IEA --
GO:0019433 triglyceride catabolic process IDA 182536
GO:0030301 cholesterol transport --
genes like me logo Genes that share ontologies with LIPC: view

Compounds for LIPC Gene

(1173) HMDB Compounds for LIPC Gene

Compound Synonyms Cas Number PubMed IDs
(2E)-Decenoyl-CoA
  • (E)-S-2-decenoate Coenzyme A
10018-95-8
(2E)-Dodecenoyl-CoA
  • 2-trans-Dodecenoyl-Coenzyme A
1066-12-2
(2E)-Hexadecenoyl-CoA
  • trans-2-Hexadecenoyl-CoA
4460-95-1
(2E)-Octenoyl-CoA
  • (E)-S-2-octenoate Coenzyme A
10018-94-7
(2E)-Tetradecenoyl-CoA
  • (2E)-Tetradecenoyl-Coenzyme A
38795-33-4

(67) Novoseek inferred chemical compound relationships for LIPC Gene

Compound -log(P) Hits PubMed IDs
cholesterol 84.1 174
cholesterol ester 80.8 27
lipid 73.9 112
triacylglycerol 68.7 37
phospholipid 64.4 51
genes like me logo Genes that share compounds with LIPC: view

Transcripts for LIPC Gene

Unigene Clusters for LIPC Gene

Lipase, hepatic:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for LIPC Gene

ExUns: 1a · 1b ^ 2 ^ 3 ^ 4 ^ 5a · 5b · 5c ^ 6a · 6b ^ 7a · 7b ^ 8a · 8b ^ 9 ^ 10
SP1:
SP2:
SP3: - - - -
SP4: - - -
SP5:

Relevant External Links for LIPC Gene

GeneLoc Exon Structure for
LIPC
ECgene alternative splicing isoforms for
LIPC

Expression for LIPC Gene

mRNA expression in normal human tissues for LIPC Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for LIPC Gene

This gene is overexpressed in Liver (39.0).

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, and MOPED for LIPC Gene

SOURCE GeneReport for Unigene cluster for LIPC Gene Hs.654472

genes like me logo Genes that share expressions with LIPC: view

No data available for mRNA Expression by UniProt/SwissProt for LIPC Gene

Orthologs for LIPC Gene

This gene was present in the common ancestor of animals.

Orthologs for LIPC Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia LIPC 35
  • 99.13 (n)
  • 98.8 (a)
LIPC 36
  • 99 (a)
OneToOne
cow
(Bos Taurus)
Mammalia LIPC 35
  • 84.48 (n)
  • 77.82 (a)
LIPC 36
  • 69 (a)
OneToOne
dog
(Canis familiaris)
Mammalia HTGL 36
  • 77 (a)
OneToOne
LIPC 35
  • 85.82 (n)
  • 79.03 (a)
mouse
(Mus musculus)
Mammalia Lipc 35
  • 80.5 (n)
  • 76.48 (a)
Lipc 16
Lipc 36
  • 74 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia LIPC 36
  • 61 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia LIPC 36
  • 52 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Lipc 35
  • 80.56 (n)
  • 75.77 (a)
chicken
(Gallus gallus)
Aves LIPC 35
  • 67.76 (n)
  • 64.75 (a)
LIPC 36
  • 64 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia LIPC 36
  • 54 (a)
OneToOne
African clawed frog
(Xenopus laevis)
Amphibia Xl.17530 35
tropical clawed frog
(Silurana tropicalis)
Amphibia lipc 35
  • 62.04 (n)
  • 58.98 (a)
zebrafish
(Danio rerio)
Actinopterygii lipca 35
  • 60.64 (n)
  • 54.47 (a)
lipca 36
  • 49 (a)
OneToOne
zgc64081 35
fruit fly
(Drosophila melanogaster)
Insecta CG5966 36
  • 24 (a)
OneToMany
CG6472 37
  • 33 (a)
CG6847 37
  • 37 (a)
sea squirt
(Ciona savignyi)
Ascidiacea -- 36
  • 22 (a)
ManyToMany
-- 36
  • 21 (a)
ManyToMany
Species with no ortholog for LIPC:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for LIPC Gene

ENSEMBL:
Gene Tree for LIPC (if available)
TreeFam:
Gene Tree for LIPC (if available)

Paralogs for LIPC Gene

Paralogs for LIPC Gene

Selected SIMAP similar genes for LIPC Gene using alignment to 5 proteins:

genes like me logo Genes that share paralogs with LIPC: view

Variants for LIPC Gene

Polymorphic Variants from UniProtKB/Swiss-Prot for LIPC Gene

P11150-LIPC_HUMAN
Genetic variations in LIPC are associated with non-insulin-dependent diabetes mellitus susceptibility (NIDDM susceptibility) [MIM:125853]

Sequence variations from dbSNP and Humsavar for LIPC Gene

SNP ID Clin Chr 15 pos Sequence Context AA Info Type MAF
rs690 -- 58,542,542(+) TCTGT(G/T)CAACT reference, synonymous-codon
rs6073 -- 58,542,518(+) CATCC(C/T)GCTGC intron-variant
rs6074 -- 58,568,764(+) CCAAC(A/C/G)CAGGA synonymous-codon, reference
rs6075 -- 58,568,889(+) GCTGC(C/T)TTATT downstream-variant-500B
rs6076 -- 58,541,739(+) TGAGC(A/G)GGGAG intron-variant

Structural Variations from Database of Genomic Variants (DGV) for LIPC Gene

Variant ID Type Subtype PubMed ID
nsv7266 OTHER Inversion 18451855
nsv904254 CNV Gain 21882294
nsv904267 CNV Gain 21882294
nsv524065 CNV Loss 19592680
nsv904268 CNV Gain 21882294
esv259952 OTHER Complex 20981092
nsv827345 CNV Gain 20364138
esv25142 CNV Gain 19812545
nsv524098 CNV Loss 19592680
nsv522373 CNV Loss 19592680
nsv94680 CNV Loss 16902084
esv1002236 CNV Gain 20482838

Relevant External Links for LIPC Gene

HapMap Linkage Disequilibrium report
LIPC
Human Gene Mutation Database (HGMD)
LIPC

Disorders for LIPC Gene

(3) OMIM Diseases for LIPC Gene (151670)

UniProtKB/Swiss-Prot

LIPC_HUMAN
  • Hepatic lipase deficiency (HL deficiency) [MIM:614025]: A disorder characterized by elevated levels of beta-migrating very low density lipoproteins, and abnormally triglyceride-rich low and high density lipoproteins. {ECO:0000269 PubMed:10660332, ECO:0000269 PubMed:1301939}. Note=The disease is caused by mutations affecting the gene represented in this entry.

(2) University of Copenhagen DISEASES for LIPC Gene

(53) Novoseek inferred disease relationships for LIPC Gene

Disease -log(P) Hits PubMed IDs
hypertriglyceridemia 84 29
hyperalphalipoproteinemia 81.5 5
hyperlipidemia familial combined 80.9 5
alphalipoproteinemia 79 1
lipase deficiency, combined 75.9 4

Genatlas disease for LIPC Gene

coronary atherosclerosis,premature,dyslipidemia

Relevant External Links for LIPC

Genetic Association Database (GAD)
LIPC
Human Genome Epidemiology (HuGE) Navigator
LIPC
genes like me logo Genes that share disorders with LIPC: view

Publications for LIPC Gene

  1. The G-250A promoter polymorphism of the hepatic lipase gene predicts the conversion from impaired glucose tolerance to type 2 diabetes mellitus: the Finnish diabetes prevention study. (PMID: 15126514) Todorova B. … Laakso M. (J. Clin. Endocrinol. Metab. 2004) 3 4 23 48
  2. The -250G>A promoter variant in hepatic lipase associates with elevated fasting serum high-density lipoprotein cholesterol modulated by interaction with physical activity in a study of 16,156 Danish subjects. (PMID: 18364377) Grarup N. … Pedersen O. (J. Clin. Endocrinol. Metab. 2008) 3 4 23 48
  3. [Association of hepatic lipase gene promoter polymorphism -514C/T with nonalcoholic fatty liver disease]. (PMID: 18510853) Zhan Q. … Wang H. (Zhonghua Gan Zang Bing Za Zhi 2008) 3 23 48
  4. Common genetic variation in six lipid-related and statin-related genes, statin use and risk of incident nonfatal myocardial infarction and stroke. (PMID: 18622260) Hindorff L.A. … Psaty B.M. (Pharmacogenet. Genomics 2008) 3 23 48
  5. Interactions between hepatic lipase and apolipoprotein E gene polymorphisms affect serum lipid profiles of healthy Canadian adults. (PMID: 18641720) Wood K.C. … Bakovic M. (Appl Physiol Nutr Metab 2008) 3 23 48

Products for LIPC Gene

Sources for LIPC Gene

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