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Aliases for LINCMD1 Gene

Subcategory (RNA class) for LINCMD1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for LINCMD1 Gene

  • Long Intergenic Non-Protein Coding RNA, Muscle Differentiation 1 2 3 5
  • MIR133B Host Gene (Non-Protein Coding) 2 3
  • Long Noncoding RNA, Muscle Differentiation 1 3
  • MIR133BHG 3
  • LINC-MD1 3

External Ids for LINCMD1 Gene

Previous HGNC Symbols for LINCMD1 Gene

  • MIR133BHG
  • LINC-MD1

Previous GeneCards Identifiers for LINCMD1 Gene

  • GC06U902314

Summaries for LINCMD1 Gene

GeneCards Summary for LINCMD1 Gene

LINCMD1 (Long Intergenic Non-Protein Coding RNA, Muscle Differentiation 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINCMD1 Gene

Genomics for LINCMD1 Gene

Regulatory Elements for LINCMD1 Gene

Enhancers for LINCMD1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH06F052116 0.2 ENCODE 11.6 +34.6 34601 0.9 ZNF766 GLIS1 FEZF1 LINCMD1 MIR133B PKHD1 MIR206 GC06P052124
GH06F052101 0.4 ENCODE 10.9 +48.0 48045 3.8 KLF1 ZNF316 MAFF MAFG EMSY MAFK LINCMD1 MIR133B MIR206 IL17A IL17F SLC25A20P1 GC06P052124 PKHD1
GH06F052216 0.4 ENCODE 10.6 -66.2 -66238 1.1 IKZF1 TCF7 ZNF384 CEBPG IL17F SLC25A20P1 IL17A LINCMD1 MIR133B MIR206 PKHD1 LOC102724327 LOC105375088
GH06F052263 0.8 ENCODE 10.4 -112.8 -112799 0.2 CTCF ZNF48 RAD21 RFX5 ZNF143 SMC3 NR2F6 THAP11 ZNF654 MAZ LINCMD1 MIR133B PKHD1 MIR206 IL17A PIR36045 SLC25A20P1
GH06F052063 1.1 Ensembl ENCODE 10 +87.3 87348 1.3 CBX3 ATF1 BMI1 ZBTB40 RAD21 CBX5 ELK1 ZNF143 ETV6 CREM PKHD1 LINCMD1 MIR133B IL17F SLC25A20P1 GC06P052010
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around LINCMD1 on UCSC Golden Path with GeneCards custom track

Genomic Location for LINCMD1 Gene

Chromosome:
6
Start:
52,146,814 bp from pter
End:
52,151,119 bp from pter
Size:
4,306 bases
Orientation:
Minus strand

Genomic View for LINCMD1 Gene

Genes around LINCMD1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINCMD1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINCMD1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINCMD1 Gene

Proteins for LINCMD1 Gene

Post-translational modifications for LINCMD1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINCMD1 Gene

Domains & Families for LINCMD1 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with LINCMD1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINCMD1 Gene

Function for LINCMD1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINCMD1 Gene

Localization for LINCMD1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for LINCMD1 Gene

Pathways & Interactions for LINCMD1 Gene

SuperPathways for LINCMD1 Gene

No Data Available

Interacting Proteins for LINCMD1 Gene

Gene Ontology (GO) - Biological Process for LINCMD1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINCMD1 Gene

Transcripts for LINCMD1 Gene

mRNA/cDNA for LINCMD1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LINCMD1 Gene

No ASD Table

Relevant External Links for LINCMD1 Gene

GeneLoc Exon Structure for
LINCMD1
ECgene alternative splicing isoforms for
LINCMD1

Expression for LINCMD1 Gene

mRNA expression in normal human tissues for LINCMD1 Gene

NURSA nuclear receptor signaling pathways regulating expression of LINCMD1 Gene:

LINCMD1
genes like me logo Genes that share expression patterns with LINCMD1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for LINCMD1 Gene

Orthologs for LINCMD1 Gene

Evolution for LINCMD1 Gene

ENSEMBL:
Gene Tree for LINCMD1 (if available)
TreeFam:
Gene Tree for LINCMD1 (if available)

No data available for Orthologs for LINCMD1 Gene

Paralogs for LINCMD1 Gene

No data available for Paralogs for LINCMD1 Gene

Variants for LINCMD1 Gene

Sequence variations from dbSNP and Humsavar for LINCMD1 Gene

SNP ID Clin Chr 06 pos Sequence Context AA Info Type
rs10484882 -- 52,146,671(-) GGTTA(C/T)GTTGA downstream-variant-500B
rs10948678 -- 52,147,488(+) AACCA(A/G)TGGGT intron-variant, upstream-variant-2KB
rs10948679 -- 52,148,075(+) GAAAG(C/T)AATAG intron-variant, upstream-variant-2KB
rs112454063 -- 52,151,547(+) TGTCA(C/T)CCGGA upstream-variant-2KB
rs112599381 -- 52,148,956(+) GCTGG(C/T)CAAAC intron-variant, nc-transcript-variant

Relevant External Links for LINCMD1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINCMD1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINCMD1 Gene

Disorders for LINCMD1 Gene

Relevant External Links for LINCMD1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
LINCMD1

No disorders were found for LINCMD1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINCMD1 Gene

Publications for LINCMD1 Gene

  1. Genome-wide profiling of long noncoding ribonucleic acid expression patterns in ovarian endometriosis by microarray. (PMID: 24502888) Sun P.R. … Lang J.H. (Fertil. Steril. 2014) 3 64
  2. Genome-wide analysis of long noncoding RNA expression in peripheral blood mononuclear cells of uremia patients. (PMID: 23100179) Sui W. … Dai Y. (J. Nephrol. 2013) 3 64
  3. A long noncoding RNA controls muscle differentiation by functioning as a competing endogenous RNA. (PMID: 22000014) Cesana M. … Bozzoni I. (Cell 2011) 3 64
  4. Creation of genome-wide protein expression libraries using random activation of gene expression. (PMID: 11329013) Harrington J.J. … Ducar M. (Nat. Biotechnol. 2001) 3 64

Products for LINCMD1 Gene

Sources for LINCMD1 Gene

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