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Aliases for LINC02561 Gene

Subcategory (RNA class) for LINC02561 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for LINC02561 Gene

  • Long Intergenic Non-Protein Coding RNA 2561 2 3 5
  • RP11-445P17.8 3

External Ids for LINC02561 Gene

Summaries for LINC02561 Gene

GeneCards Summary for LINC02561 Gene

LINC02561 (Long Intergenic Non-Protein Coding RNA 2561) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LINC02561 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC02561 Gene

Genomics for LINC02561 Gene

Regulatory Elements for LINC02561 Gene

Enhancers for LINC02561 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH10H005289 1.9 FANTOM5 Ensembl ENCODE dbSUPER 17.5 -22.6 -22610 8.8 PKNOX1 ATF1 SIN3A TCF12 ZNF143 FOS REST ZNF592 SREBF1 NFIL3 LINC02561 TUBAL3 UCN3 ENSG00000239142 AKR1C3 AKR1E2 AKR1C7P GC10M005304
GH10H005283 1.5 Ensembl ENCODE dbSUPER 11.1 -13.2 -13161 2.1 HDGF PKNOX1 ATF1 YY1 ZNF143 ATF7 REST ZNF592 MEF2D SSRP1 FBXO18 LOC105376384 FAM208B ENSG00000226647 GDI2 LINC02561 TUBAL3 RBM17 AKR1C7P
GH10H005234 1.2 Ensembl ENCODE 8.8 +36.7 36735 1 FOXA2 ARID4B YY1 MIER2 PPARG KAT8 PPARGC1A NFIL3 SSRP1 MIER3 LINC02561 AKR1C8P ENSG00000231039
GH10H005272 0.5 FANTOM5 0.7 -1.3 -1297 0.1 NFE2 EMSY AKR1C4 UCN3 LINC02561 AKR1C7P
GH10H005275 0.4 FANTOM5 0.7 -3.8 -3834 0.1 LINC02561 AKR1C7P
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around LINC02561 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC02561 Gene

Genomic Locations for LINC02561 Gene
chr10:5,266,033-5,271,236
(GRCh38/hg38)
Size:
5,204 bases
Orientation:
Minus strand
chr10:5,307,996-5,313,199
(GRCh37/hg19)

Genomic View for LINC02561 Gene

Genes around LINC02561 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC02561 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02561 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for LINC02561 Gene

Proteins for LINC02561 Gene

Post-translational modifications for LINC02561 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02561 Gene

Domains & Families for LINC02561 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC02561 Gene

Function for LINC02561 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02561 Gene

Localization for LINC02561 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02561 Gene

Pathways & Interactions for LINC02561 Gene

SuperPathways for LINC02561 Gene

No Data Available

Interacting Proteins for LINC02561 Gene

Gene Ontology (GO) - Biological Process for LINC02561 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC02561 Gene

Drugs & Compounds for LINC02561 Gene

No Compound Related Data Available

Transcripts for LINC02561 Gene

mRNA/cDNA for LINC02561 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02561 Gene

No ASD Table

Relevant External Links for LINC02561 Gene

GeneLoc Exon Structure for
LINC02561
ECgene alternative splicing isoforms for
LINC02561

Expression for LINC02561 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02561 Gene

Orthologs for LINC02561 Gene

Evolution for LINC02561 Gene

ENSEMBL:
Gene Tree for LINC02561 (if available)
TreeFam:
Gene Tree for LINC02561 (if available)

No data available for Orthologs for LINC02561 Gene

Paralogs for LINC02561 Gene

No data available for Paralogs for LINC02561 Gene

Variants for LINC02561 Gene

Relevant External Links for LINC02561 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02561

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC02561 Gene

Disorders for LINC02561 Gene

No disorders were found for LINC02561 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LINC02561 Gene

Publications for LINC02561 Gene

  1. Pseudomonas aeruginosa (PMID: 28611953) Balloy V … Scaria V (Frontiers in cellular and infection microbiology 2017) 2 3 60

Products for LINC02561 Gene

Sources for LINC02561 Gene

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