Free for academic non-profit institutions. Other users need a Commercial license

Aliases for LINC02557 Gene

Subcategory (RNA class) for LINC02557 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for LINC02557 Gene

  • Long Intergenic Non-Protein Coding RNA 2557 2 3 5

External Ids for LINC02557 Gene

Summaries for LINC02557 Gene

GeneCards Summary for LINC02557 Gene

LINC02557 (Long Intergenic Non-Protein Coding RNA 2557) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LINC02557 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC02557 Gene

Genomics for LINC02557 Gene

Regulatory Elements for LINC02557 Gene

Enhancers for LINC02557 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH22H023518 1.8 FANTOM5 Ensembl ENCODE dbSUPER 13.6 -8.0 -7964 6 PKNOX1 FOXA2 MLX ZFP64 ARID4B DMAP1 GLIS2 ATF7 SP5 MXD4 LINC02557 MMP11 GGTLC4P RGL4 GUSBP11 ENSG00000227755 DDT LINC01659 ENSG00000272787 RSPH14
GH22H023511 0.7 dbSUPER 14.1 +0.2 181 4 BCOR SCRT1 PTBP1 ZMYM3 ZNF623 ZNF23 ZFHX2 CBX1 NFIC POLR2A LINC02557 RGL4 GUSBP11 ZDHHC8P1 ENSG00000227755 DDT LINC01659 LINC01658
GH22H023509 0.5 ENCODE 13.9 +3.7 3714 0 ZFHX2 L3MBTL2 IKZF1 USF2 LINC02557 RGL4 GUSBP11 LINC01658
GH22H023532 1.6 Ensembl ENCODE dbSUPER 0.3 -22.6 -22573 8 HDGF PKNOX1 FOXA2 ARID4B ZNF2 YY1 ZNF766 ZNF143 SP5 MXD4 LOC105372957 ZNF70 LOC100652871 ENSG00000224205 ENSG00000235689 ENSG00000228039 LOC100287966 IGLV3-17 RPS10P29 SPECC1L
GH22H023510 0.5 ENCODE 0.7 +3.5 3450 0 ZFHX2 IKZF1 ZNF384 RGL4 GUSBP11 LINC02557 LINC01658
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around LINC02557 on UCSC Golden Path with GeneCards custom track

Genomic Location for LINC02557 Gene

Chromosome:
22
Start:
23,510,514 bp from pter
End:
23,513,602 bp from pter
Size:
3,089 bases
Orientation:
Minus strand

Genomic View for LINC02557 Gene

Genes around LINC02557 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC02557 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02557 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC02557 Gene

Proteins for LINC02557 Gene

Post-translational modifications for LINC02557 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02557 Gene

Domains & Families for LINC02557 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC02557 Gene

Function for LINC02557 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02557 Gene

Localization for LINC02557 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02557 Gene

Pathways & Interactions for LINC02557 Gene

SuperPathways for LINC02557 Gene

No Data Available

Interacting Proteins for LINC02557 Gene

Gene Ontology (GO) - Biological Process for LINC02557 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC02557 Gene

Drugs & Compounds for LINC02557 Gene

No Compound Related Data Available

Transcripts for LINC02557 Gene

mRNA/cDNA for LINC02557 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02557 Gene

No ASD Table

Relevant External Links for LINC02557 Gene

GeneLoc Exon Structure for
LINC02557
ECgene alternative splicing isoforms for
LINC02557

Expression for LINC02557 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02557 Gene

Orthologs for LINC02557 Gene

Evolution for LINC02557 Gene

ENSEMBL:
Gene Tree for LINC02557 (if available)
TreeFam:
Gene Tree for LINC02557 (if available)

No data available for Orthologs for LINC02557 Gene

Paralogs for LINC02557 Gene

No data available for Paralogs for LINC02557 Gene

Variants for LINC02557 Gene

Sequence variations from dbSNP and Humsavar for LINC02557 Gene

SNP ID Clin Chr 22 pos Sequence Context AA Info Type
rs1000975629 -- 23,513,685(+) TTGGT(A/G)TTGGG nc-transcript-variant, upstream-variant-2KB
rs1001689558 -- 23,515,295(+) CTGTG(C/T)TAGCC upstream-variant-2KB
rs1001953943 -- 23,510,960(+) GGGTG(C/T)GGTGT intron-variant
rs1003762710 -- 23,515,969(+) GGCCA(-/TTTT)TTTTT upstream-variant-2KB
rs1003898776 -- 23,514,269(+) GTTCC(-/AGTCTTGG)AGCCA upstream-variant-2KB

Relevant External Links for LINC02557 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02557

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC02557 Gene

Disorders for LINC02557 Gene

No disorders were found for LINC02557 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LINC02557 Gene

Publications for LINC02557 Gene

No publications were found for LINC02557 Gene.

Products for LINC02557 Gene

Sources for LINC02557 Gene

Content
Loading form....