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Aliases for LINC02542 Gene

Subcategory (RNA class) for LINC02542 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for LINC02542 Gene

  • Long Intergenic Non-Protein Coding RNA 2542 2 3 5

External Ids for LINC02542 Gene

Summaries for LINC02542 Gene

GeneCards Summary for LINC02542 Gene

LINC02542 (Long Intergenic Non-Protein Coding RNA 2542) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LINC02542 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC02542 Gene

Genomics for LINC02542 Gene

Regulatory Elements for LINC02542 Gene

Enhancers for LINC02542 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH06H082100 0.9 dbSUPER 9.7 -15.4 -15437 0.8 ATF1 FOXA2 NFRKB KLF17 FEZF1 DMAP1 NFXL1 GLIS2 ZSCAN5C ZNF350 LINC02542 RNU6-130P
GH06H082084 1.1 ENCODE dbSUPER 6 +1.1 1136 0.8 ELF3 FOXA2 MLX ARID4B THRB RARA SLC30A9 CREM MIXL1 MIER2 LINC02542 GC06P082037
GH06H081833 0.9 Ensembl ENCODE 6.5 +251.4 251401 1.4 ZNF146 JUN CEBPB EP300 RAD21 RFX5 JUND NFYB ZNF580 RCOR1 FAM46A ENSG00000206886 ENSG00000219702 LINC02542 LINC01526 ENSG00000260574
GH06H081865 1 Ensembl ENCODE 5.7 +219.8 219844 1.1 ELF3 SOX5 TFAP4 FOXA2 SAP130 FOXA3 JUN ZFP64 ZNF398 JUND LINC02542 LINC01526 ENSG00000260574
GH06H081812 0.8 FANTOM5 Ensembl 6.1 +273.0 272989 1.4 POLR2A MAFK RARA FAM46A ENSG00000219702 ENSG00000206886 LINC02542 LINC01526 LOC105377873
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around LINC02542 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC02542 Gene

Genomic Locations for LINC02542 Gene
chr6:81,843,775-82,085,889
(GRCh38/hg38)
Size:
242,115 bases
Orientation:
Minus strand
chr6:82,554,902-82,643,197
(GRCh37/hg19)

Genomic View for LINC02542 Gene

Genes around LINC02542 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC02542 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02542 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC02542 Gene

Proteins for LINC02542 Gene

Post-translational modifications for LINC02542 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02542 Gene

Domains & Families for LINC02542 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC02542 Gene

Function for LINC02542 Gene

Phenotypes From GWAS Catalog for LINC02542 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02542 Gene

Localization for LINC02542 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02542 Gene

Pathways & Interactions for LINC02542 Gene

SuperPathways for LINC02542 Gene

No Data Available

Interacting Proteins for LINC02542 Gene

Gene Ontology (GO) - Biological Process for LINC02542 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC02542 Gene

Drugs & Compounds for LINC02542 Gene

No Compound Related Data Available

Transcripts for LINC02542 Gene

mRNA/cDNA for LINC02542 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02542 Gene

No ASD Table

Relevant External Links for LINC02542 Gene

GeneLoc Exon Structure for
LINC02542
ECgene alternative splicing isoforms for
LINC02542

Expression for LINC02542 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02542 Gene

Orthologs for LINC02542 Gene

Evolution for LINC02542 Gene

ENSEMBL:
Gene Tree for LINC02542 (if available)
TreeFam:
Gene Tree for LINC02542 (if available)

No data available for Orthologs for LINC02542 Gene

Paralogs for LINC02542 Gene

No data available for Paralogs for LINC02542 Gene

Variants for LINC02542 Gene

Sequence variations from dbSNP and Humsavar for LINC02542 Gene

SNP ID Clin Chr 06 pos Sequence Context AA Info Type
rs1000010575 -- 81,879,571(+) TTAAG(A/G/T)TTTGT intron-variant
rs1000039016 -- 82,085,309(+) TCCCG(C/T)CTCTA intron-variant
rs1000040547 -- 81,912,408(+) ATGAA(G/T)TATGG intron-variant
rs1000041023 -- 82,011,090(+) AGATA(C/T)AGAGG intron-variant
rs1000075160 -- 81,891,644(+) TATGC(C/T)AGCTG intron-variant

Relevant External Links for LINC02542 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02542

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC02542 Gene

Disorders for LINC02542 Gene

No disorders were found for LINC02542 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LINC02542 Gene

Publications for LINC02542 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 60

Products for LINC02542 Gene

Sources for LINC02542 Gene

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