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Aliases for LINC02520 Gene

Subcategory (RNA class) for LINC02520 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for LINC02520 Gene

  • Long Intergenic Non-Protein Coding RNA 2520 2 3 5

External Ids for LINC02520 Gene

Previous GeneCards Identifiers for LINC02520 Gene

  • GC06P039633

Summaries for LINC02520 Gene

GeneCards Summary for LINC02520 Gene

LINC02520 (Long Intergenic Non-Protein Coding RNA 2520) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LINC02520 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC02520 Gene

Genomics for LINC02520 Gene

Regulatory Elements for LINC02520 Gene

Enhancers for LINC02520 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH06H037511 1.4 Ensembl ENCODE dbSUPER 21.4 +7.5 7507 7 HDGF FOXA2 TBL1XR1 NFIB ZFP64 KLF17 NFXL1 YY1 ZSCAN5C ZNF143 ENSG00000227920 LINC02520 CMTR1 TBC1D22B SRSF3 CCDC167 GC06M038264
GH06H037559 1.8 FANTOM5 Ensembl ENCODE dbSUPER 11.6 +55.6 55614 7 HDGF SIN3A ZNF2 ZNF121 ZNF143 ATF7 RUNX3 NFYC REST ZNF592 CCDC167 CMTR1 LINC02520 MDGA1 TBC1D22B SRSF3 TMEM217 ENSG00000279942 MIR4462
GH06H037547 1.8 FANTOM5 Ensembl ENCODE dbSUPER 11.6 +44.3 44315 9 HDGF PKNOX1 SIN3A ZNF143 ZNF207 ATF7 FOS RUNX3 JUNB REST LINC02520 CCDC167 CMTR1 ENSG00000229559 MIR4462
GH06H037432 1.1 ENCODE 15.8 -73.8 -73805 2 HDGF PKNOX1 ARID4B SIN3A DMAP1 ZNF2 YY1 CBX5 ZNF143 ZNF207 CMTR1 LINC02520 SRSF3 C6orf89 FGD2 RNF8 CCDC167
GH06H037576 1.4 Ensembl ENCODE dbSUPER 11.4 +69.4 69436 1 PKNOX1 ZNF473 ZSCAN4 INSM2 ZNF76 KLF17 ZNF155 ZNF366 FOS ZNF488 CMTR1 RN7SL285P RNU1-88P LAP3P2 LINC02520 SRSF3 ENSG00000279942 GC06M038255
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around LINC02520 on UCSC Golden Path with GeneCards custom track

Genomic Location for LINC02520 Gene

Chromosome:
6
Start:
37,507,348 bp from pter
End:
37,536,280 bp from pter
Size:
28,933 bases
Orientation:
Plus strand

Genomic View for LINC02520 Gene

Genes around LINC02520 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC02520 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02520 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC02520 Gene

Proteins for LINC02520 Gene

Post-translational modifications for LINC02520 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02520 Gene

Domains & Families for LINC02520 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC02520 Gene

Function for LINC02520 Gene

Phenotypes From GWAS Catalog for LINC02520 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02520 Gene

Localization for LINC02520 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02520 Gene

Pathways & Interactions for LINC02520 Gene

SuperPathways for LINC02520 Gene

No Data Available

Interacting Proteins for LINC02520 Gene

Gene Ontology (GO) - Biological Process for LINC02520 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC02520 Gene

Drugs & Compounds for LINC02520 Gene

No Compound Related Data Available

Transcripts for LINC02520 Gene

mRNA/cDNA for LINC02520 Gene

(1) REFSEQ mRNAs :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02520 Gene

No ASD Table

Relevant External Links for LINC02520 Gene

GeneLoc Exon Structure for
LINC02520
ECgene alternative splicing isoforms for
LINC02520

Expression for LINC02520 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02520 Gene

Orthologs for LINC02520 Gene

Evolution for LINC02520 Gene

ENSEMBL:
Gene Tree for LINC02520 (if available)
TreeFam:
Gene Tree for LINC02520 (if available)

No data available for Orthologs for LINC02520 Gene

Paralogs for LINC02520 Gene

No data available for Paralogs for LINC02520 Gene

Variants for LINC02520 Gene

Sequence variations from dbSNP and Humsavar for LINC02520 Gene

SNP ID Clin Chr 06 pos Sequence Context AA Info Type
rs1000067357 -- 37,527,361(+) ATTTT(A/G)AGTAG intron-variant
rs1000159391 -- 37,522,381(+) GAAAA(A/G)AGAAA intron-variant
rs1000168733 -- 37,512,075(+) CTGTC(A/C)CATTC intron-variant
rs1000232071 -- 37,535,818(+) AGCCC(A/G)TGGGA nc-transcript-variant
rs1000282460 -- 37,516,962(+) CAGGC(A/G)TGCCC intron-variant

Relevant External Links for LINC02520 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02520

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC02520 Gene

Disorders for LINC02520 Gene

Relevant External Links for LINC02520

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
LINC02520

No disorders were found for LINC02520 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC02520 Gene

Publications for LINC02520 Gene

  1. A genome-wide study of common SNPs and CNVs in cognitive performance in the CANTAB. (PMID: 19734545) Need AC … Goldstein DB (Human molecular genetics 2009) 3 60
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 60
  3. The DNA sequence and analysis of human chromosome 6. (PMID: 14574404) Mungall AJ … Beck S (Nature 2003) 3 60
  4. The sequence of the human genome. (PMID: 11181995) Venter JC … Zhu X (Science (New York, N.Y.) 2001) 3 60

Products for LINC02520 Gene

Sources for LINC02520 Gene

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