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Aliases for LINC02486 Gene

Subcategory (RNA class) for LINC02486 Gene

antisense

Quality Score for this RNA gene is

3

Aliases for LINC02486 Gene

  • Long Intergenic Non-Protein Coding RNA 2486 2 3
  • DKFZP434I0714 3 5
  • Uncharacterized Protein DKFZP434I0714 5

External Ids for LINC02486 Gene

ORGUL Members for LINC02486 Gene

Summaries for LINC02486 Gene

GeneCards Summary for LINC02486 Gene

LINC02486 (Long Intergenic Non-Protein Coding RNA 2486) is an RNA Gene, and is affiliated with the antisense RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC02486 Gene

Genomics for LINC02486 Gene

Regulatory Elements for LINC02486 Gene

Enhancers for LINC02486 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH04G153218 1.3 ENCODE dbSUPER 23.3 +685.1 685146 6.4 FOXA2 SIN3A FEZF1 DMAP1 ZNF2 YY1 ZNF548 FOS ZNF263 SP3 TRIM2 LINC02486 RNU6-1196P ENSG00000201786 MND1 TIGD4 RNF175 GC04M153170 LOC105377496
GH04G153151 1.2 ENCODE dbSUPER 17.9 +616.9 616943 3.1 TBP FEZF1 GLI4 BMI1 GLIS2 ZSCAN5C FOS EGR2 SP3 CEBPB LINC02486 MND1 RNU6-1196P ENSG00000201786 TRIM2 GC04M153152
GH04G153240 1.5 Ensembl ENCODE dbSUPER 10.5 +706.3 706340 3.2 PKNOX1 FEZF1 ZNF2 ZNF121 KLF7 SP3 TSHZ1 ZNF623 ZNF518A SMARCA4 RNU6-1196P ENSG00000201786 LINC02486 MND1 TRIM2 LOC105377496 GC04M153170
GH04G153266 0.9 ENCODE dbSUPER 10.5 +731.9 731858 2.9 ZNF211 RNF2 NFIA MAX ATF2 RARA ZNF507 FOXA1 FOSL1 JUND TRIM2 LINC02486 MND1 ENSG00000201786 GC04M153267 GC04M153282
GH04G152961 0.5 ENCODE 4.7 +425.1 425129 0.5 ZNF316 GATA2 FOS CEBPG NR2F2 FHDC1 LINC02486 PIR52121 GC04P152944
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around LINC02486 on UCSC Golden Path with GeneCards custom track

Promoters for LINC02486 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000174892 -564 3401 HDGF MLX CREB3L1 ARNT WRNIP1 ARID4B SIN3A FEZF1 DMAP1 ZNF2

Genomic Location for LINC02486 Gene

Chromosome:
4
Start:
152,536,264 bp from pter
End:
152,539,263 bp from pter
Size:
3,000 bases
Orientation:
Plus strand

Genomic View for LINC02486 Gene

Genes around LINC02486 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC02486 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02486 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC02486 Gene

Proteins for LINC02486 Gene

Post-translational modifications for LINC02486 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02486 Gene

Domains & Families for LINC02486 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC02486 Gene

Function for LINC02486 Gene

Phenotypes for LINC02486 Gene

GenomeRNAi human phenotypes for LINC02486:
genes like me logo Genes that share phenotypes with LINC02486: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02486 Gene

Localization for LINC02486 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for LINC02486 Gene

Pathways & Interactions for LINC02486 Gene

SuperPathways for LINC02486 Gene

No Data Available

Interacting Proteins for LINC02486 Gene

Gene Ontology (GO) - Biological Process for LINC02486 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC02486 Gene

Drugs & Compounds for LINC02486 Gene

No Compound Related Data Available

Transcripts for LINC02486 Gene

mRNA/cDNA for LINC02486 Gene

(3) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for LINC02486 Gene

Uncharacterized protein DKFZP434I0714:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02486 Gene

No ASD Table

Relevant External Links for LINC02486 Gene

GeneLoc Exon Structure for
LINC02486
ECgene alternative splicing isoforms for
LINC02486

Expression for LINC02486 Gene

SOURCE GeneReport for Unigene cluster for LINC02486 Gene:

Hs.142307
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02486 Gene

Orthologs for LINC02486 Gene

Evolution for LINC02486 Gene

ENSEMBL:
Gene Tree for LINC02486 (if available)
TreeFam:
Gene Tree for LINC02486 (if available)

No data available for Orthologs for LINC02486 Gene

Paralogs for LINC02486 Gene

No data available for Paralogs for LINC02486 Gene

Variants for LINC02486 Gene

Sequence variations from dbSNP and Humsavar for LINC02486 Gene

SNP ID Clin Chr 04 pos Sequence Context AA Info Type
rs1000489493 -- 152,536,008(+) CGGCG(A/G)CGGCG upstream-variant-2KB, utr-variant-5-prime
rs1001035776 -- 152,535,274(+) CGGGT(A/C/T)CCCCC upstream-variant-2KB, utr-variant-5-prime
rs1001227453 -- 152,535,830(+) GCTCC(C/G)GCTCT upstream-variant-2KB, utr-variant-5-prime
rs1001866304 -- 152,539,418(+) CTTGT(A/G)TACAA downstream-variant-500B
rs1001992586 -- 152,534,349(+) TGATT(C/G)CTAAC intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for LINC02486 Gene

Variant ID Type Subtype PubMed ID
nsv830116 CNV gain 17160897

Relevant External Links for LINC02486 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02486

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for LINC02486 Gene

Disorders for LINC02486 Gene

Relevant External Links for LINC02486

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
LINC02486

No disorders were found for LINC02486 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC02486 Gene

Publications for LINC02486 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for LINC02486 Gene

Sources for LINC02486 Gene

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