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Aliases for LINC02470 Gene

Subcategory (RNA class) for LINC02470 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for LINC02470 Gene

  • Long Intergenic Non-Protein Coding RNA 2470 2 3
  • AC091814.2 5

External Ids for LINC02470 Gene

Summaries for LINC02470 Gene

GeneCards Summary for LINC02470 Gene

LINC02470 (Long Intergenic Non-Protein Coding RNA 2470) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC02470 Gene

Genomics for LINC02470 Gene

Regulatory Elements for LINC02470 Gene

Enhancers for LINC02470 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH12G009942 1.5 FANTOM5 Ensembl ENCODE dbSUPER 33.1 -0.2 -205 2.2 MAZ RNF2 SP2 REST ZSCAN21 HIC1 ZNF366 GLIS1 PATZ1 ZNF629 OLR1 LINC02470 CLEC12A CLEC7A CLEC1B GABARAPL1 CD69
GH12G009864 1.1 ENCODE dbSUPER 18 +74.6 74555 8.4 TBP BMI1 YY1 GATA2 FOS CREM USF2 CEBPB TBX21 MAFF LINC02470 CLEC2A ENSG00000255882 CLEC12A ENSG00000214776 CLEC2B
GH12G009910 0.7 ENCODE 18 +32.4 32379 0.3 MXI1 CBX3 TEAD4 CHD1 MAX EP300 HDAC2 CBX5 POLR2A SCRT2 LINC02470 GC12P009886 CLEC2A
GH12G010066 1.6 FANTOM5 Ensembl ENCODE dbSUPER 6.1 -124.7 -124712 4.2 PKNOX1 JUN MAX CEBPG YY1 GATA3 GATA2 POLR2A FOS MAFK CLEC7A LINC02470 CLEC2B CLEC12A OLR1 RN7SKP161 ENSG00000256626
GH12G010016 1.2 Ensembl ENCODE dbSUPER 5 -74.2 -74237 2.5 JUN MAFG ATF2 EP300 RFX5 ZNF316 JUND GATA2 PBX2 NFE2L1 CLEC12A CLEC12A-AS1 CLEC7A KLRF1 LINC02470 CLEC1B GC12P010023
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around LINC02470 on UCSC Golden Path with GeneCards custom track

Genomic Location for LINC02470 Gene

Chromosome:
12
Start:
9,936,579 bp from pter
End:
9,943,495 bp from pter
Size:
6,917 bases
Orientation:
Minus strand

Genomic View for LINC02470 Gene

Genes around LINC02470 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC02470 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02470 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC02470 Gene

Proteins for LINC02470 Gene

Post-translational modifications for LINC02470 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02470 Gene

Domains & Families for LINC02470 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC02470 Gene

Function for LINC02470 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02470 Gene

Localization for LINC02470 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for LINC02470 Gene

Pathways & Interactions for LINC02470 Gene

SuperPathways for LINC02470 Gene

No Data Available

Interacting Proteins for LINC02470 Gene

Gene Ontology (GO) - Biological Process for LINC02470 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC02470 Gene

Drugs & Compounds for LINC02470 Gene

No Compound Related Data Available

Transcripts for LINC02470 Gene

mRNA/cDNA for LINC02470 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02470 Gene

No ASD Table

Relevant External Links for LINC02470 Gene

GeneLoc Exon Structure for
LINC02470
ECgene alternative splicing isoforms for
LINC02470

Expression for LINC02470 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02470 Gene

Orthologs for LINC02470 Gene

Evolution for LINC02470 Gene

ENSEMBL:
Gene Tree for LINC02470 (if available)
TreeFam:
Gene Tree for LINC02470 (if available)

No data available for Orthologs for LINC02470 Gene

Paralogs for LINC02470 Gene

No data available for Paralogs for LINC02470 Gene

Variants for LINC02470 Gene

Sequence variations from dbSNP and Humsavar for LINC02470 Gene

SNP ID Clin Chr 12 pos Sequence Context AA Info Type
rs1000221986 -- 9,945,280(+) GCCGG(C/T)GTCCC upstream-variant-2KB
rs1000334489 -- 9,939,682(+) CCACT(A/C)CCTTA intron-variant
rs1000349973 -- 9,943,262(+) CTGCG(G/T)GTGAA nc-transcript-variant
rs1000680355 -- 9,945,426(+) ATAGA(A/C)CTTAT upstream-variant-2KB
rs1000731819 -- 9,938,919(+) CTTTG(C/T)CTAAA intron-variant

Relevant External Links for LINC02470 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02470

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC02470 Gene

Disorders for LINC02470 Gene

No disorders were found for LINC02470 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LINC02470 Gene

Publications for LINC02470 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3 64

Products for LINC02470 Gene

Sources for LINC02470 Gene

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