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Aliases for LINC02449 Gene

Subcategory (RNA class) for LINC02449 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for LINC02449 Gene

  • Long Intergenic Non-Protein Coding RNA 2449 2 3 5

External Ids for LINC02449 Gene

Summaries for LINC02449 Gene

GeneCards Summary for LINC02449 Gene

LINC02449 (Long Intergenic Non-Protein Coding RNA 2449) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LINC02449 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC02449 Gene

Genomics for LINC02449 Gene

GeneHancer (GH) Regulatory Elements for LINC02449 Gene

Promoters and enhancers for LINC02449 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12I008235 Enhancer 0.3 ENCODE 550.8 +0.5 525 1.1 USF2 LINC02449 FAM86FP
GH12I008231 Enhancer 1 Ensembl ENCODE 0.8 -3.1 -3138 1.4 HDGF RB1 ZBTB40 RAD21 ZNF2 ZEB1 ARID2 SCRT2 ZNF143 ATF7 FAM86FP ALG1L10P LINC02449
GH12I008237 Enhancer 0.9 Ensembl ENCODE 0.8 +2.2 2186 0.4 CTCF TFAP4 SAP130 ZFP64 ARID4B KLF17 ZNF2 RAD21 TEAD3 ZNF121 LINC02449 FAM86FP
GH12I008227 Promoter 1.5 EPDnew Ensembl 0.4 -7.6 -7614 0.8 HDGF HDAC1 E4F1 POLR2A ATF7 PRDM10 IKZF2 ZNF687 L3MBTL2 NRF1 ALG1L10P FAM90A1 LINC02449
GH12I008241 Promoter/Enhancer 1.4 Ensembl ENCODE 0.4 +7.6 7606 2.8 HDGF PKNOX1 ATF1 SMAD1 ARID4B SIN3A YY1 GLIS2 ZNF207 ATF7 FAM86FP PHC1 NANOG RIMKLB ENSG00000256552 LINC00612 LINC02449 GC12P008268
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LINC02449 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC02449 Gene

Genomic Locations for LINC02449 Gene
chr12:8,235,415-8,242,564
(GRCh38/hg38)
Size:
7,150 bases
Orientation:
Plus strand
chr12:8,388,011-8,395,160
(GRCh37/hg19)

Genomic View for LINC02449 Gene

Genes around LINC02449 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC02449 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02449 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC02449 Gene

Proteins for LINC02449 Gene

Post-translational modifications for LINC02449 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02449 Gene

Domains & Families for LINC02449 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC02449 Gene

Function for LINC02449 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02449 Gene

Localization for LINC02449 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02449 Gene

Pathways & Interactions for LINC02449 Gene

SuperPathways for LINC02449 Gene

No Data Available

Interacting Proteins for LINC02449 Gene

Gene Ontology (GO) - Biological Process for LINC02449 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC02449 Gene

Drugs & Compounds for LINC02449 Gene

No Compound Related Data Available

Transcripts for LINC02449 Gene

mRNA/cDNA for LINC02449 Gene

(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02449 Gene

No ASD Table

Relevant External Links for LINC02449 Gene

GeneLoc Exon Structure for
LINC02449
ECgene alternative splicing isoforms for
LINC02449

Expression for LINC02449 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02449 Gene

Orthologs for LINC02449 Gene

Evolution for LINC02449 Gene

ENSEMBL:
Gene Tree for LINC02449 (if available)
TreeFam:
Gene Tree for LINC02449 (if available)

No data available for Orthologs for LINC02449 Gene

Paralogs for LINC02449 Gene

No data available for Paralogs for LINC02449 Gene

Variants for LINC02449 Gene

Sequence variations from dbSNP and Humsavar for LINC02449 Gene

SNP ID Clin Chr 12 pos Variation AA Info Type
rs1000139020 -- 8,242,819(+) C/G downstream_transcript_variant
rs1000422265 -- 8,242,627(+) C/A/T downstream_transcript_variant
rs1001528208 -- 8,238,788(+) G/A non_coding_transcript_variant
rs1001757290 -- 8,238,215(+) T/C intron_variant
rs1003090854 -- 8,235,301(+) T/C upstream_transcript_variant

Additional Variant Information for LINC02449 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02449

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC02449 Gene

Disorders for LINC02449 Gene

Additional Disease Information for LINC02449

No disorders were found for LINC02449 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC02449 Gene

Publications for LINC02449 Gene

No publications were found for LINC02449 Gene.

Products for LINC02449 Gene

Sources for LINC02449 Gene

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