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Aliases for LINC02446 Gene

Subcategory (RNA class) for LINC02446 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for LINC02446 Gene

  • Long Intergenic Non-Protein Coding RNA 2446 2 3
  • RP11-291B21.2 5

External Ids for LINC02446 Gene

Summaries for LINC02446 Gene

GeneCards Summary for LINC02446 Gene

LINC02446 (Long Intergenic Non-Protein Coding RNA 2446) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC02446 Gene

Genomics for LINC02446 Gene

Regulatory Elements for LINC02446 Gene

Enhancers for LINC02446 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH12G010553 1.4 FANTOM5 Ensembl ENCODE dbSUPER 8.7 +2.2 2189 2.5 SMAD5 CBX5 CBFB EED ZBED1 KLRK1 KLRC4 KLRC1 KLRD1 LINC02446 KLRA1P KLRC4-KLRK1 KLRC3 KLRC2 LOC105376675
GH12G010557 1.3 FANTOM5 ENCODE dbSUPER 6.1 +5.9 5861 2.9 CTCF TBL1XR1 MTA2 SMAD5 CBFB ZBED1 JUNB EBF1 TBX21 RELA KLRK1 KLRC4 KLRC1 KLRD1 KLRC4-KLRK1 KLRA1P LINC02446 KLRC3 KLRC2 LOC105376675
GH12G010554 0.7 ENCODE dbSUPER 0.7 +0.6 607 0.0 SMAD5 CBFB ZBED1 LINC02446 LOC105376675
GH12G010562 0.6 ENCODE 0.4 +9.9 9856 0.2 CTCF ZNF654 ZFP64 ZNF10 TRIM22 REST RAD21 CBX5 SMC3 KLRK1 STYK1 KLRC1 TMEM52B LOC105376675 LINC02446
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around LINC02446 on UCSC Golden Path with GeneCards custom track

Genomic Location for LINC02446 Gene

Chromosome:
12
Start:
10,552,661 bp from pter
End:
10,575,720 bp from pter
Size:
23,060 bases
Orientation:
Plus strand

Genomic View for LINC02446 Gene

Genes around LINC02446 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC02446 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02446 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC02446 Gene

Proteins for LINC02446 Gene

Post-translational modifications for LINC02446 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02446 Gene

Domains & Families for LINC02446 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC02446 Gene

Function for LINC02446 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02446 Gene

Localization for LINC02446 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for LINC02446 Gene

Pathways & Interactions for LINC02446 Gene

SuperPathways for LINC02446 Gene

No Data Available

Interacting Proteins for LINC02446 Gene

Gene Ontology (GO) - Biological Process for LINC02446 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC02446 Gene

Drugs & Compounds for LINC02446 Gene

No Compound Related Data Available

Transcripts for LINC02446 Gene

mRNA/cDNA for LINC02446 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02446 Gene

No ASD Table

Relevant External Links for LINC02446 Gene

GeneLoc Exon Structure for
LINC02446
ECgene alternative splicing isoforms for
LINC02446

Expression for LINC02446 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02446 Gene

Orthologs for LINC02446 Gene

Evolution for LINC02446 Gene

ENSEMBL:
Gene Tree for LINC02446 (if available)
TreeFam:
Gene Tree for LINC02446 (if available)

No data available for Orthologs for LINC02446 Gene

Paralogs for LINC02446 Gene

No data available for Paralogs for LINC02446 Gene

Variants for LINC02446 Gene

Sequence variations from dbSNP and Humsavar for LINC02446 Gene

SNP ID Clin Chr 12 pos Sequence Context AA Info Type
rs1000130007 -- 10,575,502(+) GAACT(A/G)CTCCA nc-transcript-variant
rs1000322698 -- 10,558,641(+) TCAAC(A/T)TTTTT intron-variant, nc-transcript-variant
rs1000390223 -- 10,551,694(+) CTCTA(A/G)GCCTG upstream-variant-2KB
rs1000496036 -- 10,565,775(+) TCAGG(C/T)TTGTC intron-variant
rs1000556186 -- 10,555,373(+) CCATC(G/T)CTCCT intron-variant

Relevant External Links for LINC02446 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02446

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC02446 Gene

Disorders for LINC02446 Gene

No disorders were found for LINC02446 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LINC02446 Gene

Publications for LINC02446 Gene

No publications were found for LINC02446 Gene.

Products for LINC02446 Gene

Sources for LINC02446 Gene

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