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Aliases for LINC02393 Gene

Subcategory (RNA class) for LINC02393 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for LINC02393 Gene

  • Long Intergenic Non-Protein Coding RNA 2393 2 3
  • Uncharacterized LOC400087 5
  • FLJ37505 5

External Ids for LINC02393 Gene

Summaries for LINC02393 Gene

GeneCards Summary for LINC02393 Gene

LINC02393 (Long Intergenic Non-Protein Coding RNA 2393) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC02393 Gene

Genomics for LINC02393 Gene

Regulatory Elements for LINC02393 Gene

Enhancers for LINC02393 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH12G127902 0.6 ENCODE 0.3 +21.9 21889 1.0 CTCF TEAD4 SMC3 REST HNRNPL RAD21 LINC00507 LINC02393
GH12G127888 0.4 ENCODE 0.4 +7.4 7433 1.2 ATF2 LINC02393 LINC00507
GH12G127885 0.2 ENCODE 0.4 +5.2 5163 2.8 LINC02393 LINC00507
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around LINC02393 on UCSC Golden Path with GeneCards custom track

Genomic Location for LINC02393 Gene

Chromosome:
12
Start:
127,881,617 bp from pter
End:
127,898,639 bp from pter
Size:
17,023 bases
Orientation:
Plus strand

Genomic View for LINC02393 Gene

Genes around LINC02393 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC02393 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02393 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC02393 Gene

Proteins for LINC02393 Gene

Post-translational modifications for LINC02393 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02393 Gene

Domains & Families for LINC02393 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC02393 Gene

Function for LINC02393 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02393 Gene

Localization for LINC02393 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for LINC02393 Gene

Pathways & Interactions for LINC02393 Gene

SuperPathways for LINC02393 Gene

No Data Available

Interacting Proteins for LINC02393 Gene

Gene Ontology (GO) - Biological Process for LINC02393 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC02393 Gene

Drugs & Compounds for LINC02393 Gene

No Compound Related Data Available

Transcripts for LINC02393 Gene

mRNA/cDNA for LINC02393 Gene

(1) Selected AceView cDNA sequences:
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02393 Gene

No ASD Table

Relevant External Links for LINC02393 Gene

GeneLoc Exon Structure for
LINC02393
ECgene alternative splicing isoforms for
LINC02393

Expression for LINC02393 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02393 Gene

Orthologs for LINC02393 Gene

Evolution for LINC02393 Gene

ENSEMBL:
Gene Tree for LINC02393 (if available)
TreeFam:
Gene Tree for LINC02393 (if available)

No data available for Orthologs for LINC02393 Gene

Paralogs for LINC02393 Gene

No data available for Paralogs for LINC02393 Gene

Variants for LINC02393 Gene

Sequence variations from dbSNP and Humsavar for LINC02393 Gene

SNP ID Clin Chr 12 pos Sequence Context AA Info Type
rs1000014296 -- 127,884,242(+) CACCT(C/T)TACAT intron-variant, nc-transcript-variant
rs1000105074 -- 127,887,251(+) TACAG(C/G)CTTGC intron-variant
rs1000169608 -- 127,881,168(+) TCCCC(A/G)GATGA upstream-variant-2KB
rs1000304226 -- 127,892,206(+) CCTGT(C/T)ACAAA intron-variant
rs1000367970 -- 127,892,754(+) CCTTC(G/T)TATTC intron-variant

Structural Variations from Database of Genomic Variants (DGV) for LINC02393 Gene

Variant ID Type Subtype PubMed ID
dgv1573n100 CNV gain 25217958
esv3631124 CNV gain 21293372
esv3631127 CNV gain 21293372
nsv1160068 CNV duplication 26073780

Relevant External Links for LINC02393 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02393

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for LINC02393 Gene

Disorders for LINC02393 Gene

Relevant External Links for LINC02393

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
LINC02393

No disorders were found for LINC02393 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC02393 Gene

Publications for LINC02393 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3 64
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 64

Products for LINC02393 Gene

Sources for LINC02393 Gene

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