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Aliases for LINC02328 Gene

Subcategory (RNA class) for LINC02328 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for LINC02328 Gene

  • Long Intergenic Non-Protein Coding RNA 2328 2 3 5
  • CTD-2341M24.1 3

External Ids for LINC02328 Gene

Summaries for LINC02328 Gene

GeneCards Summary for LINC02328 Gene

LINC02328 (Long Intergenic Non-Protein Coding RNA 2328) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LINC02328 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC02328 Gene

Genomics for LINC02328 Gene

Regulatory Elements for LINC02328 Gene

Enhancers for LINC02328 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH14H085933 0.8 ENCODE 6.5 +0.2 191 3 PKNOX1 IRF2 SAP130 RB1 BMI1 BATF KMT2B RELA ATF7 SMARCA5 LINC02328 LINC02316
GH14H085947 0.4 Ensembl 0.4 +13.6 13616 0 POLR2A LINC02328 LINC02316
GH14H085586 1.5 FANTOM5 Ensembl ENCODE dbSUPER 0.1 -347.2 -347249 1 SMARCE1 PKNOX1 NFIB DPF2 FOXA1 E2F1 CTBP1 JUND GATA3 POLR2A FLRT2 LOC100506731 LINC02328
GH14H085607 1.4 FANTOM5 Ensembl ENCODE dbSUPER 0.1 -326.8 -326830 1 JUND POLR3A STAT3 CEBPB FOS EP300 MAFK FLRT2 LOC100506731 LINC02328
GH14H085599 1.3 FANTOM5 Ensembl ENCODE dbSUPER 0.1 -334.3 -334273 2 POLR2A CEBPB FLRT2 LOC100506731 LINC02328
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around LINC02328 on UCSC Golden Path with GeneCards custom track

Promoters for LINC02328 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000071609 322 1201 PKNOX1 IRF2 SAP130 RB1 BMI1 BATF KMT2B RELA ATF7 SMARCA5

Genomic Location for LINC02328 Gene

Chromosome:
14
Start:
85,934,678 bp from pter
End:
86,129,778 bp from pter
Size:
195,101 bases
Orientation:
Plus strand

Genomic View for LINC02328 Gene

Genes around LINC02328 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC02328 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02328 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC02328 Gene

Proteins for LINC02328 Gene

Post-translational modifications for LINC02328 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02328 Gene

Domains & Families for LINC02328 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC02328 Gene

Function for LINC02328 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02328 Gene

Localization for LINC02328 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02328 Gene

Pathways & Interactions for LINC02328 Gene

SuperPathways for LINC02328 Gene

No Data Available

Interacting Proteins for LINC02328 Gene

Gene Ontology (GO) - Biological Process for LINC02328 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC02328 Gene

Drugs & Compounds for LINC02328 Gene

No Compound Related Data Available

Transcripts for LINC02328 Gene

mRNA/cDNA for LINC02328 Gene

(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02328 Gene

No ASD Table

Relevant External Links for LINC02328 Gene

GeneLoc Exon Structure for
LINC02328
ECgene alternative splicing isoforms for
LINC02328

Expression for LINC02328 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02328 Gene

Orthologs for LINC02328 Gene

Evolution for LINC02328 Gene

ENSEMBL:
Gene Tree for LINC02328 (if available)
TreeFam:
Gene Tree for LINC02328 (if available)

No data available for Orthologs for LINC02328 Gene

Paralogs for LINC02328 Gene

No data available for Paralogs for LINC02328 Gene

Variants for LINC02328 Gene

Sequence variations from dbSNP and Humsavar for LINC02328 Gene

SNP ID Clin Chr 14 pos Sequence Context AA Info Type
rs1000006752 -- 86,040,471(+) TAAAA(C/T)ATAAG intron-variant
rs1000030945 -- 86,032,639(+) ATCTC(A/G)CGGTT intron-variant
rs1000049059 -- 86,037,128(+) GTCAA(A/G)CTTTC intron-variant
rs1000049850 -- 85,992,862(+) TTTGT(A/G)ACATG intron-variant
rs1000066159 -- 85,952,095(+) AACAG(A/T)GTGTT intron-variant

Relevant External Links for LINC02328 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02328

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC02328 Gene

Disorders for LINC02328 Gene

Relevant External Links for LINC02328

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
LINC02328

No disorders were found for LINC02328 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC02328 Gene

Publications for LINC02328 Gene

  1. Identification of intrahepatic cholangiocarcinoma related genes by comparison with normal liver tissues using expressed sequence tags. (PMID: 16712791) Wang AG … Kim NS (Biochemical and biophysical research communications 2006) 3 60
  2. Generation and analysis of 280,000 human expressed sequence tags. (PMID: 8889549) Hillier LD … Marra M (Genome research 1996) 3 60

Products for LINC02328 Gene

Sources for LINC02328 Gene

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