Free for academic non-profit institutions. Other users need a Commercial license

Aliases for LINC02282 Gene

Subcategory (RNA class) for LINC02282 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for LINC02282 Gene

  • Long Intergenic Non-Protein Coding RNA 2282 2 3
  • RP11-966I7.2 5

External Ids for LINC02282 Gene

Summaries for LINC02282 Gene

GeneCards Summary for LINC02282 Gene

LINC02282 (Long Intergenic Non-Protein Coding RNA 2282) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC02282 Gene

Genomics for LINC02282 Gene

Regulatory Elements for LINC02282 Gene

Enhancers for LINC02282 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH14G029527 1.6 VISTA 10.7 -743.0 -743028 1.7 CTCF FUS SMC3 FOXP2 RAD21 SPI1 RNU11-5P LINC02282 GC14P029579
GH14G028785 0.9 Ensembl dbSUPER 0.7 +0.3 298 0.2 RNF2 L3MBTL2 SUZ12 RBBP5 GABPA POLR2A KDM1A ZBTB33 EZH2 MGA LINC02282 LINC01551
GH14G028774 1.4 FANTOM5 ENCODE dbSUPER 0.4 +11.1 11055 0.5 CTCF SUZ12 ZNF2 RAD21 SMC3 ZNF600 PRDM10 ZBTB20 EZH2 ZNF263 FOXG1 LINC01551 LINC02282
GH14G028780 0.5 dbSUPER 0.7 +4.2 4207 1.9 CBX2 EZH2 ZNF83 LINC02282 LINC01551
GH14G028783 0.5 dbSUPER 0.7 +1.7 1674 1.9 SUZ12 CBX2 EZH2 LINC02282 LINC01551
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around LINC02282 on UCSC Golden Path with GeneCards custom track

Genomic Location for LINC02282 Gene

Chromosome:
14
Start:
28,783,491 bp from pter
End:
28,785,798 bp from pter
Size:
2,308 bases
Orientation:
Minus strand

Genomic View for LINC02282 Gene

Genes around LINC02282 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC02282 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02282 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC02282 Gene

Proteins for LINC02282 Gene

Post-translational modifications for LINC02282 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02282 Gene

Domains & Families for LINC02282 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC02282 Gene

Function for LINC02282 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02282 Gene

Localization for LINC02282 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for LINC02282 Gene

Pathways & Interactions for LINC02282 Gene

SuperPathways for LINC02282 Gene

No Data Available

Interacting Proteins for LINC02282 Gene

Gene Ontology (GO) - Biological Process for LINC02282 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC02282 Gene

Drugs & Compounds for LINC02282 Gene

No Compound Related Data Available

Transcripts for LINC02282 Gene

mRNA/cDNA for LINC02282 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02282 Gene

No ASD Table

Relevant External Links for LINC02282 Gene

GeneLoc Exon Structure for
LINC02282
ECgene alternative splicing isoforms for
LINC02282

Expression for LINC02282 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02282 Gene

Orthologs for LINC02282 Gene

Evolution for LINC02282 Gene

ENSEMBL:
Gene Tree for LINC02282 (if available)
TreeFam:
Gene Tree for LINC02282 (if available)

No data available for Orthologs for LINC02282 Gene

Paralogs for LINC02282 Gene

No data available for Paralogs for LINC02282 Gene

Variants for LINC02282 Gene

Sequence variations from dbSNP and Humsavar for LINC02282 Gene

SNP ID Clin Chr 14 pos Sequence Context AA Info Type
rs1000303833 -- 28,785,963(+) TAAAC(C/T)TGTTT intron-variant, upstream-variant-2KB
rs1001168402 -- 28,787,291(+) AAGAA(-/T)TTTTT intron-variant, upstream-variant-2KB
rs1001385906 -- 28,784,983(+) AGAAG(A/C/G)GAGAA intron-variant
rs1002192515 -- 28,784,663(+) TCTCA(A/G/T)ACCGA intron-variant, nc-transcript-variant
rs1003196978 -- 28,783,062(+) ATATG(C/T)TTCTA intron-variant, downstream-variant-500B

Relevant External Links for LINC02282 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02282

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC02282 Gene

Disorders for LINC02282 Gene

No disorders were found for LINC02282 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LINC02282 Gene

Publications for LINC02282 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for LINC02282 Gene

Sources for LINC02282 Gene

Content
Loading form....