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Aliases for LINC02249 Gene

Subcategory (RNA class) for LINC02249 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for LINC02249 Gene

  • Long Intergenic Non-Protein Coding RNA 2249 2 3
  • DKFZP434L187 3 5
  • Uncharacterized LOC26082 5

External Ids for LINC02249 Gene

Summaries for LINC02249 Gene

GeneCards Summary for LINC02249 Gene

LINC02249 (Long Intergenic Non-Protein Coding RNA 2249) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC02249 Gene

Genomics for LINC02249 Gene

Regulatory Elements for LINC02249 Gene

Enhancers for LINC02249 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH15G030195 0.7 Ensembl 0.7 -0.1 -62 1.3 MAZ SP3 SP2 FEZF1 ZBTB8A ZNF398 ZFP69B GLIS2 ZNF692 PATZ1 LINC02249 LOC105370747
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around LINC02249 on UCSC Golden Path with GeneCards custom track

Genomic Location for LINC02249 Gene

Chromosome:
15
Start:
30,196,036 bp from pter
End:
30,214,540 bp from pter
Size:
18,505 bases
Orientation:
Plus strand

Genomic View for LINC02249 Gene

Genes around LINC02249 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC02249 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02249 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC02249 Gene

Proteins for LINC02249 Gene

Post-translational modifications for LINC02249 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02249 Gene

Domains & Families for LINC02249 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC02249 Gene

Function for LINC02249 Gene

Phenotypes for LINC02249 Gene

genes like me logo Genes that share phenotypes with LINC02249: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02249 Gene

Localization for LINC02249 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for LINC02249 Gene

Pathways & Interactions for LINC02249 Gene

SuperPathways for LINC02249 Gene

No Data Available

Interacting Proteins for LINC02249 Gene

Gene Ontology (GO) - Biological Process for LINC02249 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC02249 Gene

Transcripts for LINC02249 Gene

mRNA/cDNA for LINC02249 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02249 Gene

No ASD Table

Relevant External Links for LINC02249 Gene

GeneLoc Exon Structure for
LINC02249
ECgene alternative splicing isoforms for
LINC02249

Expression for LINC02249 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02249 Gene

Orthologs for LINC02249 Gene

Evolution for LINC02249 Gene

ENSEMBL:
Gene Tree for LINC02249 (if available)
TreeFam:
Gene Tree for LINC02249 (if available)

No data available for Orthologs for LINC02249 Gene

Paralogs for LINC02249 Gene

No data available for Paralogs for LINC02249 Gene

Variants for LINC02249 Gene

Sequence variations from dbSNP and Humsavar for LINC02249 Gene

SNP ID Clin Chr 15 pos Sequence Context AA Info Type
rs1000916952 -- 30,209,741(+) TTTTT(A/G)GATGG intron-variant
rs1001350928 -- 30,208,377(+) TTAGT(A/G)TCTGA intron-variant
rs1001473578 -- 30,208,977(+) TTCCT(A/G)CAGGT intron-variant
rs1003698106 -- 30,204,895(+) GAAAT(A/G)CCTTT intron-variant
rs1004217525 -- 30,206,017(+) AAAAA(A/T)TTTCC intron-variant

Structural Variations from Database of Genomic Variants (DGV) for LINC02249 Gene

Variant ID Type Subtype PubMed ID
dgv2495n100 CNV loss 25217958
dgv2496n100 CNV gain 25217958
dgv2497n100 CNV loss 25217958
dgv2498n100 CNV gain+loss 25217958
dgv2499n100 CNV loss 25217958
dgv2500n100 CNV gain+loss 25217958
dgv2501n100 CNV gain 25217958
dgv2502n100 CNV gain+loss 25217958
dgv2503n100 CNV loss 25217958
dgv2504n100 CNV gain 25217958
dgv2505n100 CNV loss 25217958
dgv2506n100 CNV loss 25217958
dgv2507n100 CNV loss 25217958
dgv2509n100 CNV gain 25217958
dgv2535n100 CNV gain 25217958
dgv2538n100 CNV loss 25217958
dgv2540n100 CNV loss 25217958
dgv2541n100 CNV loss 25217958
dgv2542n100 CNV loss 25217958
dgv2543n100 CNV gain 25217958
dgv2544n100 CNV gain+loss 25217958
dgv2545n100 CNV loss 25217958
dgv2546n100 CNV loss 25217958
dgv2547n100 CNV loss 25217958
dgv2548n100 CNV loss 25217958
dgv42e203 CNV gain+loss 21179565
dgv4417n54 CNV loss 21841781
dgv4418n54 CNV loss 21841781
dgv4419n54 CNV loss 21841781
dgv4420n54 CNV loss 21841781
dgv4446n54 CNV loss 21841781
dgv4453n54 CNV loss 21841781
dgv4455n54 CNV loss 21841781
esv2421738 CNV duplication 20811451
esv25982 CNV gain+loss 19812545
esv26291 CNV gain+loss 19812545
esv2751526 CNV loss 17911159
esv2751527 CNV gain 17911159
esv2760022 CNV gain+loss 17122850
esv2760023 CNV gain+loss 17122850
esv2760365 CNV gain+loss 21179565
esv2761877 CNV gain+loss 21179565
esv33337 CNV gain+loss 17666407
esv3584919 CNV gain 24956385
esv3636024 CNV loss 21293372
esv3892642 CNV gain+loss 25118596
esv3892653 CNV gain 25118596
esv3892656 CNV loss 25118596
esv3892660 CNV loss 25118596
nsv100 CNV insertion 15895083
nsv102 CNV insertion 15895083
nsv1035202 CNV gain+loss 25217958
nsv1035864 CNV gain+loss 25217958
nsv1040151 CNV gain+loss 25217958
nsv1040590 CNV loss 25217958
nsv1040778 CNV loss 25217958
nsv1041708 CNV gain 25217958
nsv1043502 CNV gain 25217958
nsv1046556 CNV loss 25217958
nsv1049639 CNV gain+loss 25217958
nsv1050172 CNV gain 25217958
nsv1050570 CNV gain+loss 25217958
nsv1050805 CNV loss 25217958
nsv1124705 CNV duplication 24896259
nsv1126386 CNV deletion 24896259
nsv1148560 OTHER inversion 26484159
nsv1160250 CNV duplication 26073780
nsv1160252 CNV deletion 26073780
nsv1160253 CNV deletion 26073780
nsv1160277 CNV duplication 26073780
nsv1475 CNV insertion 18451855
nsv428300 CNV loss 18775914
nsv428302 CNV gain+loss 18775914
nsv433292 CNV loss 18776910
nsv433433 CNV gain 18776910
nsv442695 CNV loss 18776908
nsv469713 CNV gain+loss 16826518
nsv469726 CNV loss 16826518
nsv471679 CNV loss 15918152
nsv471681 CNV gain+loss 15918152
nsv509563 CNV insertion 20534489
nsv509564 CNV insertion 20534489
nsv517740 CNV gain+loss 19592680
nsv518720 CNV gain 19592680
nsv568725 CNV loss 21841781
nsv568727 CNV gain 21841781
nsv568731 CNV loss 21841781
nsv568733 CNV loss 21841781
nsv568864 CNV loss 21841781
nsv568905 CNV loss 21841781
nsv821679 CNV gain 15273396
nsv821681 CNV gain 15273396
nsv827284 CNV gain 20364138
nsv827288 CNV loss 20364138
nsv832946 CNV gain+loss 17160897
nsv832957 CNV gain+loss 17160897
nsv9232 CNV gain+loss 18304495
nsv9238 CNV gain+loss 18304495
nsv976912 CNV duplication 23825009
nsv984047 CNV duplication 23825009

Relevant External Links for LINC02249 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02249

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for LINC02249 Gene

Disorders for LINC02249 Gene

Relevant External Links for LINC02249

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
LINC02249

No disorders were found for LINC02249 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC02249 Gene

Publications for LINC02249 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for LINC02249 Gene

Sources for LINC02249 Gene

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